Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08] 196 sequences; 9,355,338 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq28 170 2e-37 seq39 82.4 9e-11 >seq28 Length=536101 Score = 170 bits (188), Expect = 2e-37 Identities = 583/901 (65%), Gaps = 17/901 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| ||||| |||||||| || |||| | ||||| ||||| || || || || | Sbjct 320170 CATGACACCTGCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGC 320111 Query 92850 CAAAGATATCGAATTCACTA-GTGAT-TGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||| || | || | || | |||||| ||| |||| || ||||| | Sbjct 320110 CAAAGAAATGTTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCC 320051 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 || | || || ||| ||||| || || || | ||||| ||||||| || || Sbjct 320050 CAGAGCTACCAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTT 319991 Query 92968 CATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 ||| || || ||| | ||||| |||||||| || ||| | ||| ||||| | || | Sbjct 319990 CATCCCCAGTAAGGAG-ACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAG 319932 Query 93027 CTTCTTTCAAGATTTCTATTAC--TCTACTATTTGG---TGGTTTTTGTACGACATAATT 93081 | ||| | | || | | || | | || ||| | | ||| | || | ||| Sbjct 319931 CCTCTGTGATAATCTTTTCAACGATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATA 319872 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 | | |||| |||||||| || ||||| || ||||||| | || | ||||||| Sbjct 319871 GCA-----AGCAAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGA 319817 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || |||||||| | || |||| ||||| | ||| || || ||||||||| || Sbjct 319816 GAAGGTCAAACCTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCC 319757 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 ||||| || ||||| || || || || || || || | |||||| || || ||| Sbjct 319756 TGAAAAGAAGATACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAACAATGCATC 319697 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 | | |||||| | | ||||| || || |||| || ||||| || | || || Sbjct 319696 GTCATCAGAAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTC 319637 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 ||| || || || ||| | || ||| | | |||| ||||| ||||| || | || Sbjct 319636 GATGGCATTGAACAGGAATTCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAA 319577 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 || || | || || || | |||||||| || ||||| ||||| || ||| | || Sbjct 319576 GGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGC 319517 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||| | | || || || | || | || || | ||||||||||| ||||| || Sbjct 319516 TTCGGGAAGTTGAACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTC 319457 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT---TAAG 93558 || || ||||| || || | | | || || ||| |||| ||| | || | Sbjct 319456 AGAGGCAGCAAAGAAGGCAAGGACTCTCGAGATGAAGAATTTTTCATTATCGTTCATACG 319397 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 |||| ||| || | ||| || || || | ||| || |||||||||| || || Sbjct 319396 ATTATTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGC 319337 Query 93619 TTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||| || | |||||||| | ||| || || || || | | || || | |||||||| Sbjct 319336 TTCGGCCTGCTTGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAACG 319277 Query 93679 A 93679 | Sbjct 319276 A 319276 >seq39 Length=230164 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Plus Query 126272 TTGGCCGAGT-GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-GCGTGGGTT 126329 |||||||||| |||||||||||||||||| | | ||||| || ||| ||| ||||||||| Sbjct 41162 TTGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGTTCTGG-TCTCTCCGGAGGCGTGGGTT 41220 Query 126330 CGAACCCCACA 126340 ||||||||||| Sbjct 41221 CGAACCCCACA 41231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859435691040