Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08]
196 sequences; 9,355,338 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 5e-19
seq20 98.7 1e-15
seq12 93.3 4e-14
seq21 87.8 2e-12
>seq4
Length=489133
Score = 109 bits (120), Expect = 5e-19
Identities = 144/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||||||||||| || ||| | ||||| | ||| ||||| | |
Sbjct 79239 GACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCA 79180
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||||||||| ||||| || || || ||||| ||| | || | || |
Sbjct 79179 AAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTGAATCTTGGACTTGAC 79121
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||||| ||||||||||| | || | || ||||| || || || |
Sbjct 79120 GTTG-TCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCT 79062
Query 138599 TTACAAAAATCTGCAT 138614
|||| ||||| |||||
Sbjct 79061 TTACGAAAATTTGCAT 79046
>seq20
Length=98127
Score = 98.7 bits (108), Expect = 1e-15
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464
||| || || | | | || |||||||| |||||||| || | ||| | ||| ||
Sbjct 98029 AACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTC 97970
Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524
||||| ||||| | | | |||| ||| || ||||| ||||| |||||||| || || |
Sbjct 97969 CAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCT-T 97911
Query 138525 GATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583
|| | || | ||| | | || | ||||| | ||||||||||| | || | || |
Sbjct 97910 GAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCT 97851
Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || || ||||| ||||||||||||||
Sbjct 97850 TACCTGTTAGGGTTTTAACAAAAATCTGCAT 97820
>seq12
Length=252132
Score = 93.3 bits (102), Expect = 4e-14
Identities = 173/250 (69%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| | || ||| | || | | |||||||| || ||||||||||| |
Sbjct 166010 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 166069
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| | ||| || ||||| ||||| | | | || | ||| |||||||| |||||
Sbjct 166070 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 166129
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| | || | || |||| || | |||||||| ||||| |
Sbjct 166130 ATTCCTTCCTTGTC-TTGAATCTTGGACTTGACATTG-TCGATGGTGTCGGAGGACTCGA 166187
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA----TGGCTTAT 138621
| || | || | || ||||| || | || || || |||||||||| || ||| |
Sbjct 166188 CTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTGTCTTTT 166247
Query 138622 AATATTATTC 138631
||| ||| ||
Sbjct 166248 AATGTTAGTC 166257
>seq21
Length=213751
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||||||||| ||||| || | ||| | ||| || ||||| ||||| |
Sbjct 306 GATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCG 247
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| | ||| || ||||| ||||| |||||||| ||||| ||| | || | ||| |
Sbjct 246 AAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC-TTGAATCTTAGATTTGAC 188
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | || || | ||||| ||||| | || | || |||||||| ||||| ||
Sbjct 187 GTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTT 128
Query 138600 TACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 127 GACGAAAATCTGCAT 113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261184157120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |