Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08] 196 sequences; 9,355,338 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq33 125 8e-24 seq28 84.2 2e-11 >seq33 Length=271133 Score = 125 bits (138), Expect = 8e-24 Identities = 309/465 (66%), Gaps = 8/465 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || || |||| ||||| || ||||| || || || ||| | || || ||||| || Sbjct 181612 TGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAA 181671 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| |||||| || ||||| || ||| | || || ||| ||||||||| Sbjct 181672 CGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTC 181731 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || ||||| ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 181732 AATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGG 181791 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| | ||| || | ||||| | || | || || || ||||| Sbjct 181792 AATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGG 181851 Query 53482 --CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 | ||| |||| || | || ||| | | |||||||||||||| || || || || Sbjct 181852 TACTTCG--AATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTT 181909 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||| |||||| || || || | || || | ||| | ||||| ||||| ||| Sbjct 181910 GACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCC 181969 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 ||||| | | || | || | ||| ||| || ||| | || ||||| | ||| Sbjct 181970 GACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCT--A 182027 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 | ||| | || | ||| ||||||| || || || |||||| ||| Sbjct 182028 GAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAA 182072 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| ||| || ||||||||| | || |||| | | ||||| ||| ||| ||| | Sbjct 183096 TTTACAAGACTGTTTGGGAGATTTCTCAAAAGACTATTATTGATATGGCTGCCGATAGAT 183155 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 || || ||||| || || ||||| ||||||| | || | ||| | ||| | Sbjct 183156 CAGCCTATATCGATCAATCTCAGTCGTTGAACATTCACCTGATGGCTCCAACTATGGGTA 183215 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 | |||| | ||||||||||| || |||||||| ||| | ||||| ||||||||||| | Sbjct 183216 AATTGACCAGTATGCACTTTTATGGTTGGAAGAAAGGATTAAAGACTGGTATGTACTACC 183275 Query 55917 TGCGGAC 55923 |||| || Sbjct 183276 TGCGTAC 183282 >seq28 Length=536101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || ||||||| || | ||||| || || | | || ||||| || || | |||| Sbjct 319845 CCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATGAGACCTCTCTTC 319786 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | || || || |||||||| || || ||| || ||| Sbjct 319785 TTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTCAACAGCAGCGAAG 319726 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | |||| |||||| ||||||| || ||||| || ||||| ||| Sbjct 319725 GCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCTCATGGCCCAGTCA 319666 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || ||| ||||| || | || ||||| || | ||| ||| | | ||||| Sbjct 319665 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAATTCAGACTCTTTT 319606 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||| |||| | | ||||||| | ||||| ||||| || ||||| Sbjct 319605 GGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTGAAT 319556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214659320800