Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08] 196 sequences; 9,355,338 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq21 167 3e-36 seq4 161 1e-34 seq20 156 5e-33 seq12 140 4e-28 >seq21 Length=213751 Score = 167 bits (184), Expect = 3e-36 Identities = 178/235 (76%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| ||||||||||| |||||| Sbjct 113 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 172 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || |||| ||||| |||||||| || |||||||| |||||| Sbjct 173 GATACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAG 232 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || |||||||||||||| || || | | | || || | || || ||| Sbjct 233 CAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAAT 292 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTT 27640 | |||||||||||||||||||| | || || | ||| | ||||| || ||| Sbjct 293 ATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGGTGAACTTT 347 >seq4 Length=489133 Score = 161 bits (178), Expect = 1e-34 Identities = 155/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| |||||||| |||||||| || | ||||| ||||| Sbjct 79045 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 79104 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 79105 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGACCA 79164 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || ||||||||||||||| | ||||||| | | || | | ||||| || Sbjct 79165 ACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAA 79224 Query 27585 TGTCCAAAAGGAATCCACT 27603 |||||||||| || ||| Sbjct 79225 CATCCAAAAGGAGTCTACT 79243 >seq20 Length=98127 Score = 156 bits (172), Expect = 5e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || |||||||| ||||||||||| |||||| Sbjct 97819 AATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAGTCATC 97878 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || | || ||||| || ||||| || |||||||| ||||| Sbjct 97879 AGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCTGACCA 97938 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| |||||||||||||||||||||| || || | | | || || | || || || Sbjct 97939 GCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAA 97998 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||||||||||||||| || || Sbjct 97999 CATCCAAAAGGAATCCACCCTCCA 98022 >seq12 Length=252132 Score = 140 bits (154), Expect = 4e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | ||||| ||||||||||| | || || ||||| Sbjct 166237 AATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTCCTC 166178 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 166177 CGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 166118 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||||||||| || || | | | || || | ||||| || Sbjct 166117 ACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTACAA 166058 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| || ||| | || || || Sbjct 166057 CATCCAGAAGGAGTCTACTTTGCACCTGGT 166028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309002739520