Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016585.1_202016-02-08]
196 sequences; 9,355,338 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq12 152 1e-31
seq21 143 6e-29
seq20 143 6e-29
seq136 111 4e-19
seq58 93.3 1e-13
seq4 87.8 4e-12
>seq12
Length=252132
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
|||||| || ||||| | ||| || || || |||| ||||| || | || |||||| ||
Sbjct 166021 TCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACC 166080
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||||||||| || ||||| ||||||||
Sbjct 166081 GTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTT 166140
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| ||||| ||| ||| ||||||||||| |||| || || || || || ||
Sbjct 166141 GTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAAT 166200
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || || | ||| | ||||||||
Sbjct 166201 AGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 166239
>seq21
Length=213751
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
|||||| | || | ||| ||||||||||| ||||| | ||||||||| | | ||||||
Sbjct 331 AAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCT 272
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|| ||||| || ||||| ||||||||||| | ||||| ||||| || |||||||||||
Sbjct 271 ACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTC 212
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
||||||||| ||||| || || || || || ||||| | || || || | ||
Sbjct 211 CTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGT 152
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||| ||||| || || | ||| || | ||| | |||||
Sbjct 151 GATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 113
>seq20
Length=98127
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||| || || | |||||| |||||||| ||||||| |||||||| | | |||||| ||
Sbjct 98035 TCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACC 97976
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| || ||||| ||||| || || | ||||| ||||| || ||||||||||||||
Sbjct 97975 GTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTT 97916
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||| ||||| || ||| || || |||||||| | ||||| || | |||||
Sbjct 97915 ATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGAT 97856
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || | ||||| | || | ||||||||
Sbjct 97855 AGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 97817
>seq136
Length=190
Score = 111 bits (122), Expect = 4e-19
Identities = 108/138 (78%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || |||| ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||
Sbjct 46 ATGTCAAGGGATGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 105
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843
| | | | |||||| || |||||||||||||||||||| |||| | | |||| ||
Sbjct 106 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 165
Query 7844 AATATTTACGCGTTAGCT 7861
| || | |||||||||
Sbjct 166 CAACTTAATGCGTTAGCT 183
>seq58
Length=4455
Score = 93.3 bits (102), Expect = 1e-13
Identities = 192/283 (68%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502
||||| || ||||||| || | ||| ||||| ||| | ||| | ||| | || |
Sbjct 158 TTATACTTTATATTTGCATTATTCTGTGG-ATTATTAGGATCAATAATGTCTTTAATATT 216
Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562
||| ||||||||| | ||||| ||| |||||||| | ||||| ||| | | |||
Sbjct 217 AAGATTAGAATTATCAGCTCCTGGTAACCAAATATTAATGGGTAACCATCAATTATTCAA 276
Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622
|| | || || ||||| | | ||| | |||||||| || ||||| | | ||
Sbjct 277 TGTAGTAGCAACAGCACATGCTGTATTAATGGTATTCTTTTTAGTAATGCCAGCTGCAAT 336
Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682
||| ||| || |||| | | ||||||||||| ||||| ||||||| | ||| |
Sbjct 337 AGGATTTTTTGGTAATTATCTATTACCTTTAATGATAGGTGCAAGTGATATGTCATTTGC 396
Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725
|| | || ||||| ||||||||| |||| ||| | |||
Sbjct 397 TAGATTAAATAATATTTCATTTTGATTATTACCACCTGCTTTA 439
>seq4
Length=489133
Score = 87.8 bits (96), Expect = 4e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||||||||||||||| || || || || || ||||||||||| ||||||||
Sbjct 361222 GAAAATTTGACCATCAGTAATAGAAATGACGTTGGTTGGAATATAAGCAGAGACATCACC 361163
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580
|||| || || | || || || || || | || |||||||| || ||
Sbjct 361162 ACCTTGGGTCTCAATGACTGGCAAAGCGGTCAAAGAACCACCACCCAATTT 361112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192528205256024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |