Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016605.1_202016-02-08]
180 sequences; 9,359,306 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq28 154 2e-32
seq21 93.3 4e-14
seq5 82.4 8e-11
>seq28
Length=541666
Score = 154 bits (170), Expect = 2e-32
Identities = 398/604 (66%), Gaps = 7/604 (1%)
Strand=Plus/Plus
Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659
|| || || ||| | ||||| | | |||| || || |||| |||||||| |||||
Sbjct 324740 CGTCGTTTTGTGCTCTTCCCTTTGAAGTACCACGATATCTGGCAAATGTACAAGCAGGCC 324799
Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719
|| || || || ||||| | ||||| | |||||| ||||| | |||||| |
Sbjct 324800 GAAGCTTCCTTTTGGACTGCTGAGGAAATAGACCTGGGTAAGGATTTGCATGACTGGAAT 324859
Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776
|| ||||||| || || |||||| | || || ||||| || || |||
Sbjct 324860 AATCGTATGAACGATAATGAAAAATTCTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCC 324919
Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836
||||| || ||||| || || |||| || |||| | ||||| || | ||
Sbjct 324920 TCTGACGGTATTGTCAATGAAAACTTGGTGGAAAATTTCAGTGCTGAGGTTCAACTTCCC 324979
Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896
|| || ||||| ||||| || |||||| ||||||||| | ||||| || | ||
Sbjct 324980 GAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTAC 325039
Query 116897 TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACG 116954
|| || || || || ||| | | | | ||| || || |||| || |
Sbjct 325040 TCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGT--CTGAATTCCTGTTCAATG 325097
Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014
|||||||||| || || || ||||||| ||||| || ||||| || | ||||| | |
Sbjct 325098 CCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCTG 325157
Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074
|| || |||| || || |||| |||||||| || || ||||| ||||||
Sbjct 325158 ATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCT 325217
Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134
|||| || ||| || | || || ||| | ||||| | || |||||||| || |||
Sbjct 325218 TTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGA 325277
Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194
| ||| ||| ||||| || | ||| |||||||| | || |||||||| || ||||
Sbjct 325278 CCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGCTTGCTTGC 325337
Query 117195 TGTT 117198
| ||
Sbjct 325338 TATT 325341
>seq21
Length=1112242
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||||||||| || ||||| || || | || || || || || ||| | || ||||| |
Sbjct 539846 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 539905
Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||||| | | | | ||||| || |||| ||||| || || || || | ||
Sbjct 539906 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 539965
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| ||||| | || | || || || || ||||| |||| | || || |||||
Sbjct 539966 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 540025
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||||||| | || |||| || || || | ||||| || ||
Sbjct 540026 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 540076
>seq5
Length=641797
Score = 82.4 bits (90), Expect = 8e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| |||||||| || || || || || || |||||| | || || || |
Sbjct 231706 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 231765
Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
|||||| || |||| ||||| || |||| ||||| ||||| || || | ||
Sbjct 231766 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 231824
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| || || || |||| || || || || |||| || | | || | |||||
Sbjct 231825 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 231884
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892
||||||||| |||||| | || ||||
Sbjct 231885 CAACATCCAAAAGGAGTCTACTTTGCA 231911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218040756800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |