Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016605.1_202016-02-08] 180 sequences; 9,359,306 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq28 154 2e-32 seq21 93.3 4e-14 seq5 82.4 8e-11 >seq28 Length=541666 Score = 154 bits (170), Expect = 2e-32 Identities = 398/604 (66%), Gaps = 7/604 (1%) Strand=Plus/Plus Query 116600 CGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCC 116659 || || || ||| | ||||| | | |||| || || |||| |||||||| ||||| Sbjct 324740 CGTCGTTTTGTGCTCTTCCCTTTGAAGTACCACGATATCTGGCAAATGTACAAGCAGGCC 324799 Query 116660 GAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG 116719 || || || || ||||| | ||||| | |||||| ||||| | |||||| | Sbjct 324800 GAAGCTTCCTTTTGGACTGCTGAGGAAATAGACCTGGGTAAGGATTTGCATGACTGGAAT 324859 Query 116720 ---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCC 116776 || ||||||| || || |||||| | || || ||||| || || ||| Sbjct 324860 AATCGTATGAACGATAATGAAAAATTCTTCATCTCGAGAGTCCTTGCCTTCTTTGCTGCC 324919 Query 116777 AGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCC 116836 ||||| || ||||| || || |||| || |||| | ||||| || | || Sbjct 324920 TCTGACGGTATTGTCAATGAAAACTTGGTGGAAAATTTCAGTGCTGAGGTTCAACTTCCC 324979 Query 116837 GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTAT 116896 || || ||||| ||||| || |||||| ||||||||| | ||||| || | || Sbjct 324980 GAAGCAAAATGCTTTTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACTTAC 325039 Query 116897 TCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACG 116954 || || || || || ||| | | | | ||| || || |||| || | Sbjct 325040 TCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGT--CTGAATTCCTGTTCAATG 325097 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 |||||||||| || || || ||||||| ||||| || ||||| || | ||||| | | Sbjct 325098 CCATCGAGACCATTCCATGTATCAAAGAAAAGGCTGACTGGGCCATGAGATGGATTTCTG 325157 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 || || |||| || || |||| |||||||| || || ||||| |||||| Sbjct 325158 ATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGCTGCTGTTGAGGGTATCTTCT 325217 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 |||| || ||| || | || || ||| | ||||| | || |||||||| || ||| Sbjct 325218 TTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTCTCATGCCAGGTTTGA 325277 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | ||| ||| ||||| || | ||| |||||||| | || |||||||| || |||| Sbjct 325278 CCTTCTCCAATGAGCTTATTTGCAGAGACGAGGGATTACACACTGACTTTGCTTGCTTGC 325337 Query 117195 TGTT 117198 | || Sbjct 325338 TATT 325341 >seq21 Length=1112242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || ||||| || || | || || || || || ||| | || ||||| | Sbjct 539846 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 539905 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | ||||| || |||| ||||| || || || || | || Sbjct 539906 CTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCTGA 539965 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||||| | || | || || || || ||||| |||| | || || ||||| Sbjct 539966 CCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGACTA 540025 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || |||| || || || | ||||| || || Sbjct 540026 CAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGAGGTGG 540076 >seq5 Length=641797 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| |||||||| || || || || || || |||||| | || || || | Sbjct 231706 AAAATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCT 231765 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| || |||| ||||| || |||| ||||| ||||| || || | || Sbjct 231766 TCCGACACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCTGA 231824 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || || |||| || || || || |||| || | | || | ||||| Sbjct 231825 CCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTA 231884 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| |||||| | || |||| Sbjct 231885 CAACATCCAAAAGGAGTCTACTTTGCA 231911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218040756800