Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016605.1_202016-02-08] 180 sequences; 9,359,306 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15 123 2e-23 >seq15 Length=271170 Score = 123 bits (136), Expect = 2e-23 Identities = 579/915 (63%), Gaps = 16/915 (2%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||||| || |||| | || ||||| || | || |||| | ||| | Sbjct 89687 TACTTTGGATTCAAGACCTTGGAAAGATCTTACCTTCTGAGAATTAATGGTAATGTTGCA 89628 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 || || || || || || | ||||| || || ||||| ||||| || | ||||| | Sbjct 89627 GAACGTCCTCAACACTTGATTATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCA 89568 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATAC-CATGGCCACCCCGAC 93902 | ||| | ||| | ||| | | ||| | || |||| || | || || Sbjct 89567 AGAGTTATTGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATG-CCTCTCCTAC 89509 Query 93903 CCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAA 93962 ||||| ||||| || ||||| ||||| ||||| || |||||| | | | | Sbjct 89508 TCTGTTTAACGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCG 89449 Query 93963 GGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATA 94022 || ||||| || || |||| ||| | | ||||| ||||| ||||| ||| Sbjct 89448 GGATGACTCAATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAAC 89389 Query 94023 CGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGG 94082 || || ||||| || | | || | | ||||||| || |||||||| || Sbjct 89388 TGCTGGTGGAATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGG 89329 Query 94083 TACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCG 94142 ||| || || || || || || | | || ||| | |||||||||||||| | || || Sbjct 89328 TACTAACGGTACTTCGAATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCG 89269 Query 94143 CTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTG 94202 || || ||||| |||||| | | ||| | || || | || | ||||| || Sbjct 89268 TTATGTTGACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATG 89209 Query 94203 GCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG-- 94260 ||| || ||| | || ||||| || | || |||||||| || || || |||| Sbjct 89208 GCATGCCGACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGA---GGAGAT 89152 Query 94261 -AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGA 94319 || || |||||| | ||| |||| | ||| | || || || || |||||| | || || Sbjct 89151 CAGAGCTAGAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGA 89092 Query 94320 GAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTG 94379 | || || |||| || || | ||| | |||| ||| || || ||||||| | Sbjct 89091 ACAGAATGGCGATTGGACCCTGTTCTCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTA 89032 Query 94380 TGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAG-- 94437 |||| ||||| || ||||| | | |||||| | || | | | ||||| Sbjct 89031 TGGAGATGAATTTGAGGAATTGTACGAAAGATACGAA----AAGGAAGGTCGTGGAAGAC 88976 Query 94438 --GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTA 94495 || | || ||||| ||| | ||| | || | ||| || || |||| Sbjct 88975 AAACCATCAAAGCCCAAAAGCTTTGGTACGCCATCCTTGAGGCACAAACAGAAACTGGTA 88916 Query 94496 CGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGG 94555 | || | ||| ||| ||||| || ||| || | |||||| || || | || | Sbjct 88915 CTCCATTCATGCTGTATAAGGATGCTTGTAACAAAAAAACTAACCAGAAGAACTTGGGTG 88856 Query 94556 TGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTG 94615 | || || ||| || || ||| || ||||| || || |||| ||||| |||| || Sbjct 88855 TCATTAAATCCTCTAACCTTTGCTGTGAAATTGTTGAATACTCTTCCCCGGAAGAGACTG 88796 Query 94616 CTGTGTGTAACCTGG 94630 |||| |||||| ||| Sbjct 88795 CTGTCTGTAACTTGG 88781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722086872800