Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016605.1_202016-02-08] 180 sequences; 9,359,306 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq28 203 5e-47 >seq28 Length=541666 Score = 203 bits (224), Expect = 5e-47 Identities = 568/856 (66%), Gaps = 24/856 (3%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || || || || |||| || || Sbjct 325626 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATG 325567 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || | ||||| ||| | | Sbjct 325566 TTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAG-CTAC 325508 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | || ||| || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 325507 CAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAG 325448 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || ||| ||||| || | | | ||| || ||||| |||| |||| | || Sbjct 325447 TAAGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGAT 325388 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAAC 18158 || ||| || ||||| || | | ||| | | | | | || ||| || | Sbjct 325387 AATCTTTTCAAC----GATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGC 325332 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||| ||||||||||| || || |||||| | || | || || || || || | Sbjct 325331 AAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 325272 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | |||||| || || | ||| || || || || ||| | |||||||| | Sbjct 325271 CTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGA 325212 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAG 18336 |||||||||| ||| ||||| || | || | |||||| || | || | | | |||| Sbjct 325211 TACCCTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAATGCA--TCGTCATCAG 325155 Query 18337 -TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||| | ||||| || | | ||||| || || |||| || |||| Sbjct 325154 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 325095 Query 18396 TAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | |||| ||| || ||||| | |||||| || ||||| || || | ||| || || Sbjct 325094 TGAACAGGAAT--TCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTA 325037 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| | ||||| ||||| |||| ||||| || | || ||||| Sbjct 325036 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGG 324977 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| ||| || | |||| |||| ||||| || ||||| || |||||||||| | Sbjct 324976 AAGTTGAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGG 324918 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTG 18628 || || || || | || | | | ||||| |||||||||||| || | |||| Sbjct 324917 CAGCAAAGAAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTA 324859 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| |||| | ||| || || || | ||| || | |||||||| || | |||| Sbjct 324858 TTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCG 324799 Query 18689 GCCTGTTTGTACATTT 18704 ||||| |||||||||| Sbjct 324798 GCCTGCTTGTACATTT 324783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870353288000