Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016605.1_202016-02-08] 180 sequences; 9,359,306 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15 212 8e-50 seq28 109 7e-19 >seq15 Length=271170 Score = 212 bits (234), Expect = 8e-50 Identities = 791/1227 (64%), Gaps = 25/1227 (2%) Strand=Plus/Plus Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 ||||||| |||| | || | | || || || || |||||||| | |||||||| ||| Sbjct 88396 TCCCACAAGTCATATTGCAAAATGCCCTGAGATGCTGGAGAACCTTGGAAGGTTTCGTAG 88455 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 110986 | |||| | | || ||||| | || |||| | ||| || || || |||||| Sbjct 88456 GCTCCTTCTTCGACGGCTAATTCGTTGGAGGCTTCCAAAGCTGCATGGTAGATAGTTTCA 88515 Query 110987 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 111046 || || || ||| | || |||||||| |||||||| | | || ||| Sbjct 88516 AAAATCTGAATATTAAGCTGTTTGGCTTCTGGAGAATCAAAAGGAATTCTCAACTTCATA 88575 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || |||| || | |||||||||||||| | | |||||||| | |||||||| || | Sbjct 88576 AAAGCATCAGCTAAACCTTGAACACCCACAGCTATAGGTCTATTACGCATATTCGATCTC 88635 Query 111107 CGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAAC 111165 | || ||| |||||| |||||||||||||| || | || ||| | || ||||| Sbjct 88636 CTAGCT-TCTGGAACGGGGTAAAAATTTCTGTCGATAATTCTGTTCAAGTTACGAGTAAC 88694 Query 111166 AATCTTTGTGATTTCATGAAGTTTTTCATA-----ATCAAAAGTGCGAGTCTCTTC---A 111217 | || ||||||||||| || |||||| | | || ||| |||| || || Sbjct 88695 CACTTTGGTGATTTCATGCAGCTTTTCAAAGTTGTACCAGCAGT--GAGTATCATCGGTT 88752 Query 111218 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 111277 | ||| | |||||| || || || ||||| || || ||||| ||||| ||| Sbjct 88753 TCAACAAAGGCTGGAAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAA 88812 Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 | ||| || | |||||| || | ||| || ||||| ||||| ||||| ||| Sbjct 88813 GAGTATTCAACAATTTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGG 88872 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 ||| | || ||||| || |||||||| || |||||| | || || || || || || ||| Sbjct 88873 TTAGTTTTTTTGTTACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGT 88932 Query 111398 GATTTGAGAATAGCCTTCCAAACATCGGCGGC--TGGTACAATGGCGTTGGCCCGTCCCT 111455 | | || || || | ||||| | ||| || | || | | | || || | Sbjct 88933 GCCTCAAGGATGGCGTACCAAAGCTTTTGGGCTTTGATGGTTTGTC--TTCCACGACCTT 88990 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || ||||| || ||| | | ||||| || || || |||||| || || | Sbjct 88991 CCTTTTCGTATCTTTCGTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAG 89050 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || | |||| |||| || | ||| | ||| | || || | |||||||| | Sbjct 89051 GAGCTTCACTTGGAGAGAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACA 89110 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACCGAGCCTCTTCGTCACCTTGG 111634 | || || ||||||| | | || | |||||| | | || ||| || | ||| ||| Sbjct 89111 GATCAGGGATCCACAAAGCGGGGAATAAGTCTCTAGCTCTGA-TCTCCTCTTTACCATGG 89169 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | |||| ||| | | ||| || || ||||||||||| | || | || Sbjct 89170 TTCTTACGAATATCAATGAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCA 89229 Query 111695 ATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATAC 111750 | | || | || | ||| |||| | ||||| || || ||| ||| || || Sbjct 89230 AATGCACCAGGACGTTTG-TTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGAC 89288 Query 111751 GCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATT 111810 | | ||||||||||||||||| || ||| || || || ||| ||| | Sbjct 89289 CCTCACCATTGGAATAATACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGT 89348 Query 111811 GGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACA 111870 ||| | | || ||| ||||||| ||||| || ||||| || |||||| ||||| Sbjct 89349 GGCACGAATATTATGAATGTGCAAACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACA 89408 Query 111871 CTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCA 111930 ||| | | ||| | || || || | |||||||| ||| |||| | | ||| || Sbjct 89409 TTCCTTCAAAGTATCGTAAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACA 89468 Query 111931 ACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA 111990 ||||| || || || |||||||| || || || || || | || ||| |||| Sbjct 89469 TGATGACATTTGTGGGTGAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAA 89528 Query 111991 CATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 |||| | || ||| || || || || | || ||||||| || || || | Sbjct 89529 -ATACTTCTGACTCATAAAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAA 89587 Query 112050 TGCCGATTGCGACCCGCATGAACATGT 112076 ||||||| || || ||||| | || || Sbjct 89588 TGCCGATAGCAACACGCATAATCAAGT 89614 >seq28 Length=541666 Score = 109 bits (120), Expect = 7e-19 Identities = 170/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||| |||| | ||||||| ||||| |||||| | |||| Sbjct 325329 GCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCT 325270 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| | |||||||||||| | |||| ||| || || || || |||||||| Sbjct 325269 GGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAA-GATCCTGAAAAGAAGAT 325211 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATC-- 122834 |||||| ||| || || |||| | ||||| ||||| | | | | | |||| Sbjct 325210 ACCCTCAACAGCAGCGAAGGCAACCAAACGTTCAGCGAA----CAATGCATCGTCATCAG 325155 Query 122835 -AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 || |||| |||| ||||| | ||||| | | |||||||| | || | |||||| Sbjct 325154 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGC 325097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030586928000