Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016615.1_202016-02-08] 170 sequences; 9,355,931 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq43 131 1e-25 seq66 127 1e-24 seq19 123 2e-23 seq4 113 3e-20 seq133 93.3 3e-14 >seq43 Length=273409 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| | || | || || || || || |||||||| || Sbjct 80468 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 80409 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| | ||| || ||||| | ||||||||||||||||| ||| Sbjct 80408 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 80349 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||| ||| ||| ||| | || ||||| ||| || || Sbjct 80348 ATTCCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACT 80289 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 || |||||||| || ||||| || | || || || ||||| ||||| |||| Sbjct 80288 TCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCATTTTTG 80237 >seq66 Length=97371 Score = 127 bits (140), Expect = 1e-24 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| || ||||||| ||| || || |||||||| || ||||| ||||||||||| Sbjct 97290 CCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAA 97231 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| | ||| || ||||| | || |||||||| ||||| ||| Sbjct 97230 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGA 97171 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || ||| ||| || ||| | || || || | || | || || Sbjct 97170 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGT--CTGATGACTCCA 97113 Query 15317 TCT-AAG-GTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || ||| || || || |||||||| || ||||| |||||||| ||||| ||| Sbjct 97112 CCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCATTTTT 97060 >seq19 Length=213724 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | |||||| || || ||||| ||||| || ||||| || |||||||| Sbjct 213386 CCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAA 213445 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| ||||||| | ||| || |||||| | ||||||||||| ||||| ||| Sbjct 213446 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 213505 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| || || || | || || ||||| ||||| Sbjct 213506 ATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACC 213565 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || || ||||| || ||||| || || ||||| |||||| Sbjct 213566 TCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCATA 213613 >seq4 Length=489032 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | || || || | || || || ||||| |||||||| || Sbjct 409817 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 409876 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | || || ||||| || ||||| | |||| ||| |||||||| ||| Sbjct 409877 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 409936 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| ||| ||| ||| || | || || || ||| | || || Sbjct 409937 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 409996 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || || ||||| || || || ||||| ||||||||||| || Sbjct 409997 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCATTTT 410046 >seq133 Length=192 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| ||||||||| || || || || || || ||||| |||||||| || Sbjct 111 CCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 52 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGG 15247 ||| |||| | ||||| ||||| || |||||| | ||||||||||| ||| Sbjct 51 AGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178449609970