Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016615.1_202016-02-08] 170 sequences; 9,355,931 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq35 289 3e-73 seq40 244 1e-59 >seq35 Length=383322 Score = 289 bits (320), Expect = 3e-73 Identities = 613/901 (68%), Gaps = 19/901 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| || ||||| || | || || || Sbjct 167392 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 167333 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || ||||||||||| || || || || | |||||| || | ||| ||| Sbjct 167332 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGT 167273 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| | ||||| || ||||| || | ||| Sbjct 167272 AGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAG 167213 Query 18850 TTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||||| || || ||||| ||| | | || ||| || | || ||||||| ||||| Sbjct 167212 GAGACAGGAAGAGCGTCTGTGAAGTACCTTTT-TTCGATCTCGACAGCCTCTGTGATAAT 167154 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACATGCA 18966 | |||| | || ||| | | ||| | | ||| ||| | ||| || ||| Sbjct 167153 CTTTTCAACGATTTCCTCACTGGCTC--TATTGTTTAAATGAGAAAATAGCAAGCAAGCA 167096 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 || ||| |||| |||||||||||| | || | ||||| || || || ||||| ||| Sbjct 167095 AAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 167036 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 || || ||||| || || |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 167035 ATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCC 166976 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCA 19145 || || || || || ||||| | | ||| | ||| | ||||| | || | |||||| Sbjct 166975 TCAACAGCAGCGAAGGCAACCAAACGTTCAGC-GAACAATGCATCGTCATCAGAAATCCA 166917 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | ||| ||||| |||||||| | ||| | |||||| || ||||| || | ||| || || Sbjct 166916 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAG 166857 Query 19206 --ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || || | ||| | || |||||| | || | ||| |||| || ||| | || Sbjct 166856 GAATTCAGA--CTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 166799 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||| || || || ||||| || |||||||| ||| ||||||| | | || Sbjct 166798 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 166739 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 || ||| || || |||| ||||| |||||||| || || || ||| || ||||| Sbjct 166738 ACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAG 166679 Query 19384 AATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAAT 19438 || || | || | | | || || |||||||| | ||| || ||||||| | Sbjct 166678 AAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCAT-TATCGTTCATACGATTATTCCAGT 166621 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 ||| | ||| ||| | |||| ||| ||| | |||||||| ||||| || || | | Sbjct 166620 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 166561 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558 | ||||| | ||| ||||| | || | | ||| || | ||||| | | |||||| | Sbjct 166560 TGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAACGACGTTTATTCT 166501 Query 19559 C 19559 | Sbjct 166500 C 166500 >seq40 Length=245285 Score = 244 bits (270), Expect = 1e-59 Identities = 623/945 (66%), Gaps = 6/945 (1%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || ||||| || | ||||| ||||| ||| | || || |||| | || Sbjct 62883 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 62942 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAttnnnnttGTT 47995 |||| || || ||| |||| || |||||| || | || ||| | ||||| Sbjct 62943 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 63002 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| || ||||| || ||||| || || || ||||||||| | || | |||| ||| | Sbjct 63003 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 63062 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||||| | || || || ||| | | || | ||||||| | Sbjct 63063 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 63122 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 || || | |||||||||||| ||||| || | | | |||||| |||| | ||| | Sbjct 63123 GTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGA 63182 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | || | |||||| ||| | || |||||| |||| || | ||| || ||||| | Sbjct 63183 GAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGATCCACAA 63242 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||| || |||| ||| | || || || ||| ||| | || |||| Sbjct 63243 AGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAATATCAAT 63302 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| | | || || ||||||||||| || || || | || | | |||| || ||||| Sbjct 63303 GAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAGGACGTTT 63362 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| ||||| || | ||| | ||||| ||||| | || || | |||||| | ||| Sbjct 63363 GTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTGGAATAAT 63422 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||| || |||| || || || | ||| || ||| | || | |||||| ||| Sbjct 63423 ACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGAAT 63482 Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 || || ||| || ||||| || |||| || |||| |||||| || | ||||| | Sbjct 63483 GTGCAA-ACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAAGTATCGT 63541 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||| ||||| || ||||| ||| | || ||||| |||||||| || | Sbjct 63542 AAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACATTTGTGGGT 63601 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAA 48652 || || || | ||||| | || ||||| |||||| | || | |||| || ||| Sbjct 63602 GAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTGACTCATA- 63660 Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712 || ||||| ||||||||||| | || || ||| || || |||| ||||| Sbjct 63661 -AAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAATGCCGATAGCAACACG 63719 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 ||| | || | |||||| | ||| ||| || ||| ||| ||| ||| || ||| | Sbjct 63720 CATAATCAAGTGTTGAGGACGTTCTGCAACATTACCATTAATTCTCAGAAGGTAAGATCT 63779 Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817 |||||| || || || ||||| ||||| || |||||| |||| Sbjct 63780 TTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTCTCTATC 63824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107605518800