Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016615.1_202016-02-08]
170 sequences; 9,355,931 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq43 100 2e-16
seq4 95.1 8e-15
seq19 89.7 3e-13
seq66 82.4 5e-11
>seq43
Length=273409
Score = 100 bits (110), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| ||||| |||||||| | || ||||||||| ||||| ||||| ||
Sbjct 80468 CCACCTCTCAATCTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGAC 80409
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | | || ||||||||||| || || || |||| ||||| ||||| | ||
Sbjct 80408 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGA 80349
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || |||||||| | || || ||||| || | ||||| || || |||
Sbjct 80348 ATTCCTTCCTTGTCTTGAATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAGGACTC 80293
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || | ||| || ||||| || || | |||||| || || ||||||||
Sbjct 80292 GACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 80242
>seq4
Length=489032
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| || ||||| || ||||||| ||| | || |||||| || ||||| ||||| ||
Sbjct 409817 CCACCTCTCAATCTAAGGACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAC 409876
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
| | | |||| |||| |||||| || || |||||||| || || ||||| | ||
Sbjct 409877 AAAGTTCTACCATCCTCCAATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGA 409936
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| ||||||||||| | || || |||||| | || | || | ||| ||
Sbjct 409937 ATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACC 409996
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | ||| || ||||| || || ||||||||||| || || |||||
Sbjct 409997 TCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTACGAAAATTTGCAT 410043
>seq19
Length=213724
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828
|||| ||||| ||| ||||| ||||| || || || || || | | | || |||
Sbjct 213404 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCC 213463
Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888
|||||||| || |||||||||| ||||||||||| | || | || |||||||| |
Sbjct 213464 AGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGA 213523
Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948
|| || ||||||| | || | || | ||| || |||| || || |||||
Sbjct 213524 ATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTA 213583
Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || ||||| || || ||||||||
Sbjct 213584 CCAGTTAGAGTCTTGACGAAAATCTGCAT 213612
>seq66
Length=97371
Score = 82.4 bits (90), Expect = 5e-11
Identities = 158/231 (68%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||| || || || |||| ||| | |||| ||||| || ||||| || || ||
Sbjct 97290 CCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAA 97231
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| | | | || ||||||||||| || || || || | ||||||||||| | ||
Sbjct 97230 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGA 97171
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926
| || ||||| || | || || |||||| || |||| || || | |||
Sbjct 97170 ATACCTTCCTTATCTTGAATCTTGGATTTGAC--AT--TATCAATAGTGTCTGATGACTC 97115
Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||| || || ||||| || || ||||| || ||||| ||||||||
Sbjct 97114 CACCTCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 97064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692125205230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |