Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20pastoris_20[genbank_20GCA_5F900016615.1_202016-02-08]
170 sequences; 9,355,931 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq40 125 8e-24
seq35 84.2 2e-11
>seq40
Length=245285
Score = 125 bits (138), Expect = 8e-24
Identities = 309/465 (66%), Gaps = 8/465 (2%)
Strand=Plus/Minus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
||| || || |||| ||||| || ||||| || || || ||| | || || ||||| ||
Sbjct 63675 TGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAA 63616
Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361
||||||||| |||||| || ||||| || ||| | || || ||| |||||||||
Sbjct 63615 CGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTC 63556
Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421
|| || ||||| ||||| || | ||||| ||||| |||||||| | |||||
Sbjct 63555 AATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGG 63496
Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481
|| ||| | ||| || | ||||| | || | || || || |||||
Sbjct 63495 AATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGG 63436
Query 53482 --CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539
| ||| |||| || | || ||| | | |||||||||||||| || || || ||
Sbjct 63435 TACTTCG--AATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTT 63378
Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599
|||| |||||| || || || | || || | ||| | ||||| ||||| |||
Sbjct 63377 GACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCC 63318
Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657
||||| | | || | || | ||| ||| || ||| | || ||||| | |||
Sbjct 63317 GACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCT--A 63260
Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702
| ||| | || | ||| ||||||| || || || |||||| |||
Sbjct 63259 GAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAA 63215
Score = 98.7 bits (108), Expect = 1e-15
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796
||||| ||| || ||||||||| | || |||| | | ||||| ||| ||| ||| |
Sbjct 62191 TTTACAAGACTGTTTGGGAGATTTCTCAAAAGACTATTATTGATATGGCTGCCGATAGAT 62132
Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856
|| || ||||| || || ||||| ||||||| | || | ||| | ||| |
Sbjct 62131 CAGCCTATATCGATCAATCTCAGTCGTTGAACATTCACCTGATGGCTCCAACTATGGGTA 62072
Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916
| |||| | ||||||||||| || |||||||| ||| | ||||| ||||||||||| |
Sbjct 62071 AATTGACCAGTATGCACTTTTATGGTTGGAAGAAAGGATTAAAGACTGGTATGTACTACC 62012
Query 55917 TGCGGAC 55923
|||| ||
Sbjct 62011 TGCGTAC 62005
>seq35
Length=383322
Score = 84.2 bits (92), Expect = 2e-11
Identities = 193/290 (67%), Gaps = 3/290 (1%)
Strand=Plus/Minus
Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828
|| || ||||||| || | ||||| || || | | || ||||| || || | ||||
Sbjct 167080 CCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATGAGACCTCTCTTC 167021
Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888
|||||||| ||||| | | || || || |||||||| || || ||| || |||
Sbjct 167020 TTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTCAACAGCAGCGAAG 166961
Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCA 74945
|| || | |||| |||||| ||||||| || ||||| || ||||| |||
Sbjct 166960 GCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCTCATGGCCCAGTCA 166901
Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005
|| ||| ||||| || | || ||||| || | ||| ||| | | |||||
Sbjct 166900 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAATTCAGACTCTTTT 166841
Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055
||||| |||| | | ||||||| | ||||| ||||| || |||||
Sbjct 166840 GGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTGAAT 166791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547214837166000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |