Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12]
7 sequences; 9,397,609 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 6e-24
seq3 118 9e-22
seq2 104 2e-17
>seq4
Length=1814878
Score = 125 bits (138), Expect = 6e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||| || ||||| | ||||| | ||||||||||| ||
Sbjct 1484240 ATGCAGATTTTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 1484181
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| ||||| ||||| ||||| ||
Sbjct 1484180 GACACTATTGACAACGTAAAGTCTAAGATTCA-AGACAAGGAAGGTATTCCTCCTGATCA 1484122
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || ||||| || || ||| | ||||||| | | ||| | || |||||
Sbjct 1484121 GCAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAA 1484062
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || |||||||| || || || || ||||| ||||||| ||
Sbjct 1484061 CATCCAGAAGGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGG 1484014
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||| || ||||| | ||||| | ||||||||||| ||
Sbjct 1484468 ATGCAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 1484409
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | || | ||| ||||| ||||| ||||| ||||||||
Sbjct 1484408 GACACTATTGACAACGTAAAGTCTAAGATTCA-AGACAAGGAAGGTATTCCTCCTGACCA 1484350
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || || || || || ||||| ||||||| | | ||| | || |||||
Sbjct 1484349 GCAACGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAA 1484290
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| ||||| || || || || || |||| || ||||| ||
Sbjct 1484289 CATCCAAAAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGAGGTGG 1484242
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || ||||| | ||||| | || || ||||| ||
Sbjct 1484012 ATGCAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCA 1483953
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| ||||| || |||| || | || | ||| ||||| ||||| ||||| |||||
Sbjct 1483952 GATACTATTGATAACGTCA---AATCTAAGATTCAA-GACAAGGAAGGTATTCCTCCTGA 1483897
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| || || | || || || || || ||| | ||||| | | | ||| | |||||
Sbjct 1483896 CCAGCAACGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTA 1483837
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||||||| |||||||| || || || || |||| || ||||| ||
Sbjct 1483836 CAATATTCAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGAGGTGG 1483786
>seq3
Length=2260675
Score = 118 bits (130), Expect = 9e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || |||||||| | |||||||| | ||||| | || |||||||| ||
Sbjct 1393533 AATGCAAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAGTCTTC 1393474
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || | ||| | || | ||| ||||| || || ||||| |||||||
Sbjct 1393473 CGACACTATTGACAACGTCAAGTCCAAGATTCAG-GACAAGGAGGGAATTCCTCCTGACC 1393415
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
||||||| | || ||||| || || ||||| || |||| | | ||| || || ||||
Sbjct 1393414 AACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACA 1393355
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| || || || | || || || || || | ||||| ||
Sbjct 1393354 ACATCCAAAAGGAGTCTACTTTGCACTTGGTCCTTAGATTGAGAGGTGG 1393306
>seq2
Length=2396783
Score = 104 bits (114), Expect = 2e-17
Identities = 148/204 (73%), Gaps = 6/204 (3%)
Strand=Plus/Minus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
|| |||||| || || || ||||| || |||||||| | || || | ||||| |||||
Sbjct 893038 AAAAATGCAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAGTC 892979
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|| ||||| ||||| || || ||| | || | ||| ||||| ||||| ||||| ||
Sbjct 892978 CTCCGACACCATCGA--CAATGTCAAGTCCAAGATTCAA-GACAAGGAAGGAATTCCTCC 892922
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||||||| || | |||||||| || || ||| | ||||| | | | ||| || ||
Sbjct 892921 TGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGA 892862
Query 25172 TTACAATATTCAAAAAGAATCCAC 25195
||||| || || || || || ||
Sbjct 892861 CTACAACATCCAGAAGGAGTCTAC 892838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327963031705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |