Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq2 107 2e-18 seq3 95.1 1e-14 >seq4 Length=1814878 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| ||||| ||||| | ||| || || |||| ||| Sbjct 1483810 TGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 1483869 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 1483870 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 1483929 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || || || ||||| || || ||||| | || || || || Sbjct 1483930 GATTTGA-CGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAGTCTTACCAGT 1483988 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || ||||| ||||| Sbjct 1483989 TAGAGTCTTGACGAAAATCTGCAT 1484012 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| || ||| |||||||| Sbjct 1484266 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAATTGC 1484325 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || |||||||| || Sbjct 1484326 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 1484385 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||||| || ||||| ||||| ||||| | || || || || Sbjct 1484386 GACTTTA-CGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTTACCAGT 1484444 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||| || || ||||| ||||| Sbjct 1484445 TAAAGTCTTGACGAAAATCTGCAT 1484468 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || ||||| | ||| || || |||| ||| Sbjct 1484722 TGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCCAGTTGC 1484781 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || || ||||||||||| || ||||| ||||| ||||||||||| || Sbjct 1484782 TTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGAATCTTG 1484841 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | ||||| || ||||| || || ||||| | || || || ||| Sbjct 1484842 GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTTACCTGTT 1484901 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || ||||| |||||||| ||||| Sbjct 1484902 AGGGTTTTAACAAAAATCTGCAT 1484924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||||||||| || || || | ||| || ||| |||||||| Sbjct 1484494 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCCAATTGC 1484553 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| ||||||||||| || ||||| ||||| || ||||||| | || Sbjct 1484554 TTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCTTGAA-TCTT 1484612 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | | | || | || | ||| || || || || || || || |||| || || || || Sbjct 1484613 AGACTTAACGTTGTCAATGGTATCCGACGATTCTACCTCAAGGGTAATAGTCTTACCTGT 1484672 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| Sbjct 1484673 CAAGGTCTTGACGAAGATCTGCAT 1484696 >seq2 Length=2396783 Score = 107 bits (118), Expect = 2e-18 Identities = 308/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Minus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAA-AACGCAA 123361 || || |||||||| || ||||||| || |||| ||||| || || || | || | | Sbjct 390873 GCCATTTATCTAGAGCCATGGCACGAAGAAGTGTTTGATTTGTTGAACTTGAGAAAGAAT 390814 Query 123362 CATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTT 123421 || || ||| || | | |||| | ||||| || |||||||| ||| | ||||| | Sbjct 390813 CACGGCAA-GGAGGAGATCAGAGCCAGAGATTTATTCTACGCTTTGTGGATTCCCGACCT 390755 Query 123422 GTTTATGCGACGCGT--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 |||||| | || |||||| | | | |||| ||| | ||| | || Sbjct 390754 TTTTATGGAAAAAGTCGAAAAGA--ATGAGGACTGGTGCCTCTTCAACCCCTTGCA-TGC 390698 Query 123480 CCC-GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCG 123538 | || |||| || ||||||||| | || || || | || || | |||||| Sbjct 390697 CAAAGGTTTGAATGATGTTTACGGCGAACAATTCAACCTCCTTTATGCTGAGTACGAGAA 390638 Query 123539 CGAAGGCAAAC-AGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAA 123597 ||||| || | ||||| || |||| || | | || | || |||| | || Sbjct 390637 -GAAGGGAATGTATGTTAGAAAGATTCCTGCTCAACAATTATGGAATGCTATTGTAGACG 390579 Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 | ||| | || || || || |||| |||| | || |||||| | |||||||||||| | | Sbjct 390578 CTCAAATTGAGACAGGGACTCCGTTCATGTTGTATAAAGACTCTTGCAACAGGAAATCTA 390519 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA-- 123715 | || ||||||||||| |||||| ||||| |||| | |||| |||||| | || || Sbjct 390518 ACCAAAGCAACTTGGGTACAATACAATGTTCTAATTTGTGCTGTGAAATTGTGGAGTACT 390459 Query 123716 CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | | | | || ||| | || |||||||||||||| || || Sbjct 390458 CTTCAAGG--GACCAAATCGCAGTGTGTAATTTGGCCTCCAT 390419 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| || || |||| || || ||||| ||||| || || || | ||| || Sbjct 892820 CTCAGAACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCG 892879 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 892880 TCTTCCAGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 892939 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | ||||||||| ||||||||||| | |||| Sbjct 892940 TCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATA 892999 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || ||||| ||||| Sbjct 893000 GTCTTACCGGTTAAGGTCTTGACGAAAATCTGCAT 893034 >seq3 Length=2260675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 |||| || || ||||||||||| || || || | ||| || ||| |||||||| Sbjct 1393330 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGC 1393389 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | |||| || || ||||| || ||||| || || || || ||||| || Sbjct 1393390 TTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTG 1393449 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | |||||||||||||| || || | || | || || ||||| Sbjct 1393450 GACTTGA-CGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGT 1393508 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| ||||||||||| Sbjct 1393509 AAGGGTCTTTACGAAAATTTGCAT 1393532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003160449720