Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12]
7 sequences; 9,397,609 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4 289 3e-73
seq1 244 1e-59
>seq4
Length=1814878
Score = 289 bits (320), Expect = 3e-73
Identities = 613/901 (68%), Gaps = 19/901 (2%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | |||||| ||||| ||||| || ||||| || | || || ||
Sbjct 438450 TTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATGTTC 438509
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
||||| || ||||||||||| || || || || | |||||| || | ||| |||
Sbjct 438510 TCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAGCTACCAGT 438569
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || || | || ||| | ||||| || ||||| || | |||
Sbjct 438570 AGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAGTAAG 438629
Query 18850 TTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
||||| || || ||||| ||| | | || ||| || | || ||||||| |||||
Sbjct 438630 GAGACAGGAAGAGCGTCTGTGAAGTACCTTTT-TTCGATCTCGACAGCCTCTGTGATAAT 438688
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGA--AGATGTTTAAACATCAAACATGCA 18966
| |||| | || ||| | | ||| | | ||| ||| | ||| || |||
Sbjct 438689 CTTTTCAACGATTTCCTCACTGGCTC--TATTGTTTAAATGAGAAAATAGCAAGCAAGCA 438746
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|| ||| |||| |||||||||||| | || | ||||| || || || ||||| |||
Sbjct 438747 AAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGC 438806
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086
|| || ||||| || || |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 438807 ATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCC 438866
Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCA 19145
|| || || || || ||||| | | ||| | ||| | ||||| | || | ||||||
Sbjct 438867 TCAACAGCAGCGAAGGCAACCAAACGTTCAGC-GAACAATGCATCGTCATCAGAAATCCA 438925
Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
| ||| ||||| |||||||| | ||| | |||||| || ||||| || | ||| || ||
Sbjct 438926 TCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAG 438985
Query 19206 --ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263
|| || | ||| | || |||||| | || | ||| |||| || ||| | ||
Sbjct 438986 GAATTCAGA--CTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCG 439043
Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323
|| ||||| || || || ||||| || |||||||| ||| ||||||| | | ||
Sbjct 439044 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGGAAGTTGA 439103
Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
|| ||| || || |||| ||||| |||||||| || || || ||| || |||||
Sbjct 439104 ACCTCAGCACTGAAATTTTCCACCAAGTTTTCATTGACAATACCGTCAGAGGCAGCAAAG 439163
Query 19384 AATGCTAATACATGTTTA-ATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAAT 19438
|| || | || | | | || || |||||||| | ||| || ||||||| |
Sbjct 439164 AAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCAT-TATCGTTCATACGATTATTCCAGT 439221
Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498
||| | ||| ||| | |||| ||| ||| | |||||||| ||||| || || | |
Sbjct 439222 CATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCGGCCTGCT 439281
Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTT 19558
| ||||| | ||| ||||| | || | | ||| || | ||||| | | |||||| |
Sbjct 439282 TGTACATTTGCCAGATATCGTGGTACTTCAAAGGGAAGAGCACAAAACGACGTTTATTCT 439341
Query 19559 C 19559
|
Sbjct 439342 C 439342
>seq1
Length=2891404
Score = 244 bits (270), Expect = 1e-59
Identities = 623/945 (66%), Gaps = 6/945 (1%)
Strand=Plus/Plus
Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935
||| || ||||| || | ||||| ||||| ||| | || || |||| | ||
Sbjct 1096689 AAGAGCAATAGAAGCCAAGTTACAGACAGCAGTCTCTTCCGGGGAAGAGTATTCAACAAT 1096748
Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAttnnnnttGTT 47995
|||| || || ||| |||| || |||||| || | || ||| | |||||
Sbjct 1096749 TTCACAGCAAAGGTTAGAGGATTTAATGACACCCAAGTTCTTCTGGTTAGTTTTTTTGTT 1096808
Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055
||| || ||||| || ||||| || || || ||||||||| | || | |||| ||| |
Sbjct 1096809 ACAAGCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGC 1096868
Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115
| ||||| | || || || ||| | | || | ||||||| |
Sbjct 1096869 GTACCAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTC 1096928
Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175
|| || | |||||||||||| ||||| || | | | |||||| |||| | ||| |
Sbjct 1096929 GTACAATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGA 1096988
Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235
| || | |||||| ||| | || |||||| |||| || | ||| || ||||| |
Sbjct 1096989 GAACAGGGTCCAATCGCCATTCTGTTCTACTCTTTTCATGAACAGATCAGGGATCCACAA 1097048
Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295
||| ||||| || |||| ||| | || || || ||| ||| | || ||||
Sbjct 1097049 AGCGGGGAATAAGTCTCTAGCTCTGATCTCCTCTTTACCATGGTTCTTACGAATATCAAT 1097108
Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355
||| | | || || ||||||||||| || || || | || | | |||| || |||||
Sbjct 1097109 GAAGGCAAAGATGTCGGCATGCCATGGCTCCAAGTACAAAGCAAATGCACCAGGACGTTT 1097168
Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415
||||| ||||| || | ||| | ||||| ||||| | || || | |||||| | |||
Sbjct 1097169 GTTACCACCTTGGTCAACATAACGAGCAGTGTTGTTGAAGACCCTCACCATTGGAATAAT 1097228
Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475
|||||| || |||| || || || | ||| || ||| | || | |||||| |||
Sbjct 1097229 ACCATTCGAAGTACCGTTAGTACCAGCAATGTAGGATCCTGTGGCACGAATATTATGAAT 1097288
Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534
|| || ||| || ||||| || |||| || |||| |||||| || | ||||| |
Sbjct 1097289 GTGCAA-ACCAATTCCACCAGCAGTTTTGGAGATTAAAGCACATTCCTTCAAAGTATCGT 1097347
Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594
|||| ||||| || ||||| ||| | || ||||| |||||||| || |
Sbjct 1097348 AAATGCCTTCAATTGAGTCATCCCGCATGGCAACTAAGAAACATGATGACATTTGTGGGT 1097407
Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CTGATAA 48652
|| || || | ||||| | || ||||| |||||| | || | |||| || |||
Sbjct 1097408 GAGGGGTACCAGCGTTAAACAGAGTAGGAGAGGCATGAGTGAAATACTTCTGACTCATA- 1097466
Query 48653 CAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACG 48712
|| ||||| ||||||||||| | || || ||| || || |||| |||||
Sbjct 1097467 -AAGTTATAAGTTTCAATAACTCTTGCAATGTCATCACCATGAATGCCGATAGCAACACG 1097525
Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772
||| | || | |||||| | ||| ||| || ||| ||| ||| ||| || ||| |
Sbjct 1097526 CATAATCAAGTGTTGAGGACGTTCTGCAACATTACCATTAATTCTCAGAAGGTAAGATCT 1097585
Query 48773 TTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATC 48817
|||||| || || || ||||| ||||| || |||||| ||||
Sbjct 1097586 TTCCAAGGTCTTGAATCCAAAGTAGTTATACTGAAAGTCTCTATC 1097630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108750815480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |