Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4 113 3e-20 seq3 104 2e-17 seq2 89.7 4e-13 >seq4 Length=1814878 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 || || || || || | || ||||| || || ||| || |||||||||||||||||| Sbjct 1483783 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 1483842 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 || ||| ||| | |||| |||| |||||||| || || |||| || || || || | Sbjct 1483843 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 1483902 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 |||| || |||||||| |||||| ||| || | | | || ||||| | ||| Sbjct 1483903 GGAATACCTTCCTTGTCTTGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCT 1483962 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| | || || || || || || | ||| || || ||||||||||| Sbjct 1483963 ACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 1484012 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||||| | | ||||| || || ||| || ||||| || ||||||||||| Sbjct 1484698 CCACCCCTTAATCTTAGAACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAA 1484757 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | |||| |||| |||||||| ||||| || | || || || || | ||| Sbjct 1484758 AGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGA 1484817 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||||| ||| ||| | | | || ||||| | ||||||| Sbjct 1484818 ATACCTTCCTTATCTTGAATCTTGGATTTGACATTATCAATAGTGTCTGATGACTCCACC 1484877 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | ||||| |||||||||||||| Sbjct 1484878 TCAAGAGTGATAGTCTTACCTGTTAGGGTTTTAACAAAAATCTGCAT 1484924 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || || || || ||||| ||||| ||| ||| | | || ||| Sbjct 1484032 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCC 1484091 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||||| ||||| ||||| || || ||||| | |||| || |||||||| | Sbjct 1484092 AGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 1484151 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||||| | | || ||||| | |||||| || | || || || || Sbjct 1484152 ATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTTA 1484211 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || |||||||||||||| Sbjct 1484212 CCAGTTAAAGTCTTGACAAAAATCTGCAT 1484240 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || ||||| || || || || ||||| || ||||| ||||| ||| ||| | | || Sbjct 1484257 AAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTACCATCT 1484316 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 ||||| |||||||| || || |||| || || || || | |||| || |||||||| Sbjct 1484317 TCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTCT 1484376 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| ||||| | | || ||||| | |||||| || | || || || Sbjct 1484377 TGAATCTTAGACTTTACGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTC 1484436 Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || ||||||||||| Sbjct 1484437 TTACCAGTTAAAGTCTTGACGAAAATCTGCAT 1484468 >seq3 Length=2260675 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| || ||||| ||||| | | ||| | | || ||||| |||||||| ||||| Sbjct 1393341 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 1393400 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| |||||||| || | |||| ||||||||||| |||||| || || Sbjct 1393401 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTT 1393460 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || | ||||||||||| || || || || || || | || ||||| Sbjct 1393461 GTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTAC 1393520 Query 48755 AAAAATCTGCAT 48766 ||||| ||||| Sbjct 1393521 GAAAATTTGCAT 1393532 >seq2 Length=2396783 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| ||||| ||| ||| | |||| |||| |||||||| ||||| Sbjct 892843 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 892902 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||||| || | |||| || |||||||| |||||| || ||| Sbjct 892903 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTGGACTTGACATT 892962 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| || |||| ||||| || || || || || || || || Sbjct 892963 GTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGAC 893022 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 893023 GAAAATCTGCAT 893034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937567501261