Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 203 5e-47 >seq4 Length=1814878 Score = 203 bits (224), Expect = 5e-47 Identities = 568/856 (66%), Gaps = 24/856 (3%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || |||||||| || || || || |||| || || Sbjct 438447 GCCTTTTGGTAATCAGAAACTCTCTTTTCGAAGAAGTTGGTTTTACCGGCCAAAGAAATG 438506 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATA-ATATTTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || | ||||| ||| | | Sbjct 438507 TTCTCCATGAAGTCAAATGGATTGTTGACGTTGTACACCTTTTTGTTGCCCAGAG-CTAC 438565 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 | || ||| || || || || || ||||| || ||||||| ||| ||||| || || Sbjct 438566 CAGTAGTCTGTCAGCAACGAACTCAACATACTGGCACATCAAGCTGCAGTTCATCCCCAG 438625 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || || ||| ||||| || | | | ||| || ||||| |||| |||| | || Sbjct 438626 TAAGGAGACAGGAAGAGCGTCTGTGAAGTACCTTTTTTCGATCTCGACAGCCTCTGTGAT 438685 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAAC 18158 || ||| || ||||| || | | ||| | | | | | || ||| || | Sbjct 438686 AATCTTTTCAAC----GATTTCCTCACTGGCTCTATTGTTTAAATGAGAAAATAGCAAGC 438741 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||| ||||||||||| || || |||||| | || | || || || || || | Sbjct 438742 AAGCAAAGTCAGTGTGTAATCCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAAC 438801 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||| | |||||| || || | ||| || || || || ||| | |||||||| | Sbjct 438802 CTGGCATGAGACCTCTCTTCTTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGA 438861 Query 18279 TACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAG 18336 |||||||||| ||| ||||| || | || | |||||| || | || | | | |||| Sbjct 438862 TACCCTCAACAGCA-GCGAAGGCAACCAAACGTTCAGCGAACAATGCA--TCGTCATCAG 438918 Query 18337 -TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCAT 18395 |||||| | ||||| || | | ||||| || || |||| || |||| Sbjct 438919 AAATCCATCTCATGGCCCAGTCAGCCTTTTCTTTGATACATGGAATGGTCTCGATGGCAT 438978 Query 18396 TAAACA--AATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 | |||| ||| || ||||| | |||||| || ||||| || || | ||| || || Sbjct 438979 TGAACAGGAAT--TCAGACTCTTTTGGATCTTTGATGTAAGTATCAATCAGCAAGGAGTA 439036 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 | || || || ||| | ||||| ||||| |||| ||||| || | || ||||| Sbjct 439037 AGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAAAAGCATTTTGCTTCGGG 439096 Query 18514 ATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | ||||| ||| || | |||| |||| ||||| || ||||| || |||||||||| | Sbjct 439097 AAGTTGAACCTCAGCACTGAAAT-TTTCCACCAAGTTTTCATTGACAATACCGTCAGAGG 439155 Query 18573 ATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTG 18628 || || || || | || | | | ||||| |||||||||||| || | |||| Sbjct 439156 CAGCAAAGAAGGCAAGGAC-TCTCGAGATGAAGAATTTTTCATTATCGTTCATACGATTA 439214 Query 18629 TTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCG 18688 ||||| |||| | ||| || || || | ||| || | |||||||| || | |||| Sbjct 439215 TTCCAGTCATGCAAATCCTTACCCAGGTCTATTTCCTCAGCAGTCCAAAAGGAAGCTTCG 439274 Query 18689 GCCTGTTTGTACATTT 18704 ||||| |||||||||| Sbjct 439275 GCCTGCTTGTACATTT 439290 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| || ||||| || | ||||| || || Sbjct 1484240 ATGCAGATTTTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCA 1484181 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||| || ||||| || ||||| || ||||| || || Sbjct 1484180 GACACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 1484121 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| |||||||| || |||||| |||||| | || || || || Sbjct 1484120 CAACGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAAC 1484061 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || || || ||||||||||||| ||| Sbjct 1484060 ATCCAGAAGGAATCCACCCTCCACTTGGTTCTAAGATTAAGAGGTGGT 1484013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871935961200