Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 113 1e-19 seq2 107 5e-18 seq1 84.2 5e-11 >seq4 Length=1814878 Score = 113 bits (124), Expect = 1e-19 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || || |||||| | |||||||| || ||| Sbjct 1484465 CAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGAC 1484406 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| || ||||| ||| || ||| ||| Sbjct 1484405 ACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1484346 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | |||||||| || ||||| ||||||||||| || ||| | | || |||||| || Sbjct 1484345 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 1484286 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 || || || |||||||| ||| | ||||| ||||| Sbjct 1484285 CAAAAGGAATCTACTCTCCACTTGGTTTTAAGACT 1484251 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| ||| || ||| ||| | | |||||||| || ||| Sbjct 1484612 AAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAACGTTTGATCTTCGCTGGTAAG 1484553 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| || ||| | | || |||||| |||| || || |||||||| ||| Sbjct 1484552 CAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATCCAAAAGGAATCTACTCTCCAC 1484493 Query 206374 CTTGTTTTGAGACT 206387 | ||||| ||||| Sbjct 1484492 TTGGTTTTAAGACT 1484479 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||| | |||||||| || ||| Sbjct 1484237 CAGATTTTTGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGAC 1484178 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||||||||| || ||||| ||| || || ||| Sbjct 1484177 ACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAGCAA 1484118 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||| |||||||||| || ||| | | || |||||| || Sbjct 1484117 CGTCTGATCTTTGCTGGTAAGCAACTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 1484058 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||| || || || || ||| | ||| | ||| Sbjct 1484057 CAGAAGGAATCCACCCTCCACTTGGTTCTAAGA 1484025 Score = 84.2 bits (92), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| ||||| || ||||| || || |||||| | || ||||| Sbjct 1484927 AAAATG---CAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGGAG 1484871 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || ||||| | || || || ||||||||||| || ||||| ||| || Sbjct 1484870 TCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTCCT 1484811 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | | || || || || ||||| ||||||| || || ||| | | ||| Sbjct 1484810 GACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGAT 1484751 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||||| |||| || || || || || ||| | ||| | ||| Sbjct 1484750 TACAACATCCAAAAGGAATCCACCCTCCACTTGGTTCTAAGA 1484709 >seq2 Length=2396783 Score = 107 bits (118), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 206158 AAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAA 206217 ||| | |||||| ||||| || ||| || | || || || || || || |||||| Sbjct 893043 AAGACAAAAATG---CAGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAA 892987 Query 206218 GTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATT 206277 || || || ||||| |||| || ||| ||||||||||| || ||||||||| Sbjct 892986 GTCGAGTCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATT 892927 Query 206278 TTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTG 206337 || ||| ||| | | || || || || ||||| ||||||| || || ||| || Sbjct 892926 CCTCCTGACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTG 892867 Query 206338 GCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 | || |||||| ||||||| ||||||||| | ||||| ||| ||||| Sbjct 892866 TCTGACTACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGA 892819 >seq1 Length=2891404 Score = 84.2 bits (92), Expect = 5e-11 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 173107 GCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTGC 173166 || ||||| || | ||||| || ||||| || | ||| ||| | | ||| || | Sbjct 1096813 GCATCCTTATACAGCATGAATGGAGTACCAGTTTCTGTTTGTGCCTCAAGGATGGCGTAC 1096872 Query 173167 CAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATAG 173226 ||||| | ||||||||| | ||| ||| | | ||||| ||||||||||| || || Sbjct 1096873 CAAAGCTTTTGGGCTTTGATGGTTTGTCTTCCACGACCTTCCTTTTCGTATCTTTCGTAC 1096932 Query 173227 AGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAAG 173286 | || || || || | || || | ||| |||| || |||||||| | ||| | || Sbjct 1096933 AATTCCTCAAATTCATCTCCATAGACGTCGGCAAGGCCAGGAGCTTCACTTGGAGAGAAC 1096992 Query 173287 AGACTCCAATTTCCA-TCGGTCTCGACCCTCTTCATGAAGAGGTC 173330 || |||||| ||| || || || || || |||||||| || || Sbjct 1096993 AGGGTCCAATCGCCATTCTGT-TCTACTCTTTTCATGAACAGATC 1097036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820694005447