Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq4 100 3e-16 >seq1 Length=2891404 Score = 131 bits (144), Expect = 2e-25 Identities = 389/600 (65%), Gaps = 0/600 (0%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || || ||||||| ||||| || ||| | | |||| || || || || Sbjct 1097528 ATGCGTGTTGCTATCGGCATTCATGGTGATGACATTGCAAGAGTTATTGAAACTTATAAC 1097469 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 | ||||| ||||||| ||||| || || | || || || || ||||| ||||| Sbjct 1097468 TTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAACGCTGGTACCCCT 1097409 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 |||| || ||||| |||||| |||| || ||| ||||||| ||||| ||||| Sbjct 1097408 CACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTCAATTGAAGGCATT 1097349 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || | ||||| || || |||||||| | || || || || | ||| Sbjct 1097348 TACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGGAATTGGTTTGCAC 1097289 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGT 19417 ||||| || | | || | || ||| || ||||| | | ||| Sbjct 1097288 ATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGGTACTTCGAATGGT 1097229 Query 19418 ATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGC 19477 || | |||||| | | |||||||||||||| || | || || |||| || || | Sbjct 1097228 ATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTTGACCAAGGTGGTAAC 1097169 Query 19478 AAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTC 19537 ||||| || | || || | ||| | ||||||||||| || ||| || | | ||| Sbjct 1097168 AAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCCGACATCTTTGCCTTC 1097109 Query 19538 CTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCC 19597 | || | || |||||| ||| | |||||||| | | | ||| | ||| | || Sbjct 1097108 ATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCTAGAGACTTATTCCCCGCT 1097049 Query 19598 TTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATG 19657 |||||||| || || || |||||| | | || || || | | || ||| |||| | Sbjct 1097048 TTGTGGATCCCTGATCTGTTCATGAAAAGAGTAGAACAGAATGGCGATTGGACCCTGTTC 1096989 Query 19658 TGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 | || ||| |||||||| |||||||||| || || | || | || |||||| Sbjct 1096988 TCTCCAAGTGAAGCTCCTGGCCTTGCCGACGTCTATGGAGATGAATTTGAGGAATTGTAC 1096929 >seq4 Length=1814878 Score = 100 bits (110), Expect = 3e-16 Identities = 202/292 (69%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 59826 ATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAG 59885 || ||||||||||| ||||| | |||| |||| | |||| ||||| ||||| Sbjct 439051 ATTCACTCCGAGACTTACTCCTTGCTGATTGATACTTACATCAAAGATCCAAAAGAGTCT 438992 Query 59886 GCTGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGC 59944 | |||||| |||||| |||| | | || | | | ||| |||| || || ||||| Sbjct 438991 GAATTCCTGTTCAATGCCATCGAGACCATTCCATGTA-TCAAAGAAAAGGCTGACTGGGC 438933 Query 59945 CATGCAGTGGATGAGTCCTG--GA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATG 60001 |||| ||||| | || || |||| || || ||||| | | || || || || Sbjct 438932 CATGAGATGGATTTCTGATGACGATGCATTGTTCGCTGAACGTTTGGTTGCCTTCGC-TG 438874 Query 60002 C-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTG 60060 | || || || |||||||| || || || || | |||| |||||| | || ||| | | Sbjct 438873 CTGTTGAGGGTATCTTCTTTTCAGGATCTTTTGCTTCTATCTTCTGGTTGAAGAAGAGAG 438814 Query 60061 GCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGG 60112 | |||||||| || ||| |||||||| ||||| |||| | | |||||||| Sbjct 438813 GTCTCATGCCAGGTTTGACCTTCTCCAATGAGCTTATTTGCAGAGACGAGGG 438762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524752004080