Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1 125 8e-24 seq4 84.2 2e-11 >seq1 Length=2891404 Score = 125 bits (138), Expect = 8e-24 Identities = 309/465 (66%), Gaps = 8/465 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 ||| || || |||| ||||| || ||||| || || || ||| | || || ||||| || Sbjct 1097481 TGAAACTTATAACTTTATGAGTCAGAAGTATTTCACTCATGCCTCTCCTACTCTGTTTAA 1097422 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||||||||| |||||| || ||||| || ||| | || || ||| ||||||||| Sbjct 1097421 CGCTGGTACCCCTCACCCACAAATGTCATCATGTTTCTTAGTTGCCATGCGGGATGACTC 1097362 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || ||||| ||||| || | ||||| ||||| |||||||| | ||||| Sbjct 1097361 AATTGAAGGCATTTACGATACTTTGAAGGAATGTGCTTTAATCTCCAAAACTGCTGGTGG 1097302 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| | ||| || | ||||| | || | || || || ||||| Sbjct 1097301 AATTGGTTTGCACATTCATAATATTCGTGCCACAGGATCCTACATTGCTGGTACTAACGG 1097242 Query 53482 --CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 | ||| |||| || | || ||| | | |||||||||||||| || || || || Sbjct 1097241 TACTTCG--AATGGTATTATTCCAATGGTGAGGGTCTTCAACAACACTGCTCGTTATGTT 1097184 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 |||| |||||| || || || | || || | ||| | ||||| ||||| ||| Sbjct 1097183 GACCAAGGTGGTAACAAACGTCCTGGTGCATTTGCTTTGTACTTGGAGCCATGGCATGCC 1097124 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT--GCGCTGCC 53657 ||||| | | || | || | ||| ||| || ||| | || ||||| | ||| Sbjct 1097123 GACATCTTTGCCTTCATTGATATTCGTAAGAACCATGGTAAAGAGGAGATCAGAGCT--A 1097066 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 | ||| | || | ||| ||||||| || || || |||||| ||| Sbjct 1097065 GAGACTTATTCCCCGCTTTGTGGATCCCTGATCTGTTCATGAAAA 1097021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| ||| || ||||||||| | || |||| | | ||||| ||| ||| ||| | Sbjct 1095997 TTTACAAGACTGTTTGGGAGATTTCTCAAAAGACTATTATTGATATGGCTGCCGATAGAT 1095938 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 || || ||||| || || ||||| ||||||| | || | ||| | ||| | Sbjct 1095937 CAGCCTATATCGATCAATCTCAGTCGTTGAACATTCACCTGATGGCTCCAACTATGGGTA 1095878 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 | |||| | ||||||||||| || |||||||| ||| | ||||| ||||||||||| | Sbjct 1095877 AATTGACCAGTATGCACTTTTATGGTTGGAAGAAAGGATTAAAGACTGGTATGTACTACC 1095818 Query 55917 TGCGGAC 55923 |||| || Sbjct 1095817 TGCGTAC 1095811 >seq4 Length=1814878 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || || ||||||| || | ||||| || || | | || ||||| || || | |||| Sbjct 438762 CCCTCGTCTCTGCAAATAAGCTCATTGGAGAAGGTCAAACCTGGCATGAGACCTCTCTTC 438821 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||||||| ||||| | | || || || |||||||| || || ||| || ||| Sbjct 438822 TTCAACCAGAAGATAGAAGCAAAAGATCCTGAAAAGAAGATACCCTCAACAGCAGCGAAG 438881 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCG---GAAGTCATCCAAGTCTGAGCCCATTCA 74945 || || | |||| |||||| ||||||| || ||||| || ||||| ||| Sbjct 438882 GCAACCAAACGTTCAGCGAACAATGCATCGTCATCAGAAATCCATCTCATGGCCCAGTCA 438941 Query 74946 GCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCG 75005 || ||| ||||| || | || ||||| || | ||| ||| | | ||||| Sbjct 438942 GCCTTTTCTTTGATACATGGAATGGTCTCGATGGCATTGAACAGGAATTCAGACTCTTTT 439001 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAAT 75055 ||||| |||| | | ||||||| | ||||| ||||| || ||||| Sbjct 439002 GGATCTTTGATGTAAGTATCAATCAGCAAGGAGTAAGTCTCGGAGTGAAT 439051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215952118600