Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12]
7 sequences; 9,397,609 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq4 134 9e-27
seq2 116 2e-21
seq3 100 2e-16
>seq4
Length=1814878
Score = 134 bits (148), Expect = 9e-27
Identities = 159/213 (75%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| |||||||| ||||| ||||| ||||| |||| |||||||
Sbjct 1484716 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCAGAAAGAGTTCTACCGTCTTCC 1484775
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| |||||||| || ||||| || || | || ||||| |||
Sbjct 1484776 AGTTGCTTACCAGCAAAAATTAAACGTTGCTGGTCAGGAGGAATACCTTCCTTATCTTGA 1484835
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| | ||| || || ||| |||||| |||||| || | || || || ||
Sbjct 1484836 ATCTTG-GATTTGACATTATCAATAGTGTCTGATGACTCCACCTCAAGAGTGATAGTCTT 1484894
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
||| |||| ||||| |||||||||||||| ||
Sbjct 1484895 ACCTGTTAGGGTTTTAACAAAAATCTGCATTTT 1484927
Score = 125 bits (138), Expect = 4e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34477 TCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCT 34536
|| || |||||||| | || ||||| || |||||| ||||||||||| || |||||
Sbjct 1483783 TCACCACCTCTAAGTCTTAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCA 1483842
Query 34537 GAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGC 34596
||||| |||| ||||||| ||||| ||||| || || || ||||| || ||||| ||
Sbjct 1483843 GAAAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 1483902
Query 34597 GGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTC 34655
|| | || ||||||||| ||| || | ||| ||| || ||| || ||| |||
Sbjct 1483903 GGAATACCTTCCTTGTCT-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTC 1483961
Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || | || || || ||||| |||| || || || |||||||||||
Sbjct 1483962 TACCTCAAGAGTGATAGTCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 1484012
Score = 116 bits (128), Expect = 2e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| || | || ||||| |||||||| |||||||| ||||| || || |||
Sbjct 1484242 CCACCTCTCAGTCTTAAAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAA 1484301
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| |||| | ||||| | ||| ||||| || || || ||||| || ||||| || ||
Sbjct 1484302 AGAGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 1484361
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658
| || ||||||||| ||||| |||| || | ||| |||||| ||||||
Sbjct 1484362 ATACCTTCCTTGTCTTGAATCTTAGACTTTA-CGTTGTCAATAGTGTCTGATGACTCCAC 1484420
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | || || || ||||| ||||| || || || |||||||||||
Sbjct 1484421 TTCAAGAGTGATAGTCTTACCAGTTAAAGTCTTGACGAAAATCTGCAT 1484468
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| ||| ||||| || ||||| || || ||||| |||| | |||||
Sbjct 1484032 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTACCATCTTCC 1484091
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
||||| ||||| ||||| || | ||| || || || || || | || |||||||||
Sbjct 1484092 AGTTGCTTACCAGCAAAGATCAGACGTTGCTGATCAGGAGGAATACCTTCCTTGTCTTGA 1484151
Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
||||| |||| || | ||| |||||| ||||||||| | || || || ||
Sbjct 1484152 ATCTTAGACTTTA-CGTTGTCAATAGTGTCTGATGACTCCACTTCAAGAGTGATAGTCTT 1484210
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| ||||| || || ||||||||||||||
Sbjct 1484211 ACCAGTTAAAGTCTTGACAAAAATCTGCAT 1484240
>seq2
Length=2396783
Score = 116 bits (128), Expect = 2e-21
Identities = 145/196 (74%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| || || || || |||| ||||||| ||||| ||||| |||||
Sbjct 892843 CTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCCAGTTGCTTACCAGCAAA 892902
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| ||||| |||||||| || || | ||| ||||||||| ||||| | || ||
Sbjct 892903 AATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTG-GACTTGACAT 892961
Query 34635 TAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
| || ||||| | ||| ||||||| ||| || || ||||||||||| || || |
Sbjct 892962 TGTCGATGGTGTCGGAGGACTCGACTTCCAAGGTAATAGTCTTACCGGTTAAGGTCTTGA 893021
Query 34694 CAAAAATCTGCATGTT 34709
| ||||||||||| ||
Sbjct 893022 CGAAAATCTGCATTTT 893037
>seq3
Length=2260675
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| || | ||| ||||||||| ||||| || || || | |||| | || ||
Sbjct 1393324 ACCAAGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCC 1393383
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
| ||| ||||| ||||| || | |||||||||||| || || | |||||||||||| ||
Sbjct 1393384 AATTGCTTACCAGCAAAGATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTC-CTG 1393442
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| || | || ||| | ||| ||||| |||||| |||| ||| || || ||
Sbjct 1393443 AATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTT 1393502
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|||||| | || || || ||||| ||||| |||
Sbjct 1393503 ACCGGTAAGGGTCTTTACGAAAATTTGCATTTTG 1393536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729573149631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |