Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq3 129 1e-24 seq2 125 2e-23 >seq4 Length=1814878 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || || || || ||||| || ||||| || ||||| Sbjct 1484009 CAGATTTTCGTCAAGACTCTAACTGGTAAGACTATCACTCTTGAGGTAGAGTCATCAGAT 1483950 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1483949 ACTATTGATAACGTCAAATCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1483890 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || || ||||| || || |||||| | ||||| || | Sbjct 1483889 CGTTTGATCTTCGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTGATTACAATATT 1483830 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || || ||||| ||| Sbjct 1483829 CAAAAGGAATCCACTCTTCACTTGGTATTAAGACTTAGA 1483791 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||| | || || || || ||||| || || ||||| |||||| Sbjct 1484465 CAGATTTTCGTCAAGACTTTAACTGGTAAGACTATCACTCTTGAAGTGGAGTCATCAGAC 1484406 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1484405 ACTATTGACAACGTAAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1484346 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| || |||||| | || || ||| || Sbjct 1484345 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 1484286 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | ||||| ||||| ||| Sbjct 1484285 CAAAAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGA 1484247 Score = 149 bits (164), Expect = 2e-30 Identities = 165/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 |||||| | || ||||| || ||||| || ||||| || || ||||| || ||||||| Sbjct 1484932 TTAAAAAAATGCAGATTTTTGTTAAAACCCTAACAGGTAAGACTATCACTCTTGAGGTGG 1484873 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | |||||||| || || || |||||| |||||||| || || ||||| || |||| Sbjct 1484872 AGTCATCAGACACTATTGATAATGTCAAATCCAAGATTCAAGATAAGGAAGGTATTCCTC 1484813 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | ||||||||||| | || || || || || || || ||||| || || |||||| | | Sbjct 1484812 CTGACCAGCAACGTTTAATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTTTCTG 1484753 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||| ||||||| ||||| || || || |||| || Sbjct 1484752 ATTACAACATCCAAAAGGAATCCACCCTCCA-CTTGGTT 1484715 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | ||||| || || || ||||| ||||| ||| || || Sbjct 1484693 CAGATCTTCGTCAAGACCTTGACAGGTAAGACTATTACCCTTGAGGTAGAATCGTCGGAT 1484634 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 1484633 ACCATTGACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAGCAA 1484574 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| || |||||| | || || ||| || Sbjct 1484573 CGTTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTAGAACTCTTTCTGACTACAACATC 1484514 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | ||||| ||||| ||| Sbjct 1484513 CAAAAGGAATCTACTCTCCACTTGGTTTTAAGACTGAGA 1484475 >seq3 Length=2260675 Score = 129 bits (142), Expect = 1e-24 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| || || || || || || || |||||| | |||||||| Sbjct 1393535 AAAATGC---AAATTTTCGTAAAGACCCTTACCGGTAAGACTATCACCTTGGAGGTGGAG 1393479 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || |||||||| |||||||||||||| || ||||| ||||| Sbjct 1393478 TCTTCCGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCT 1393419 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| || || || ||||| || || || || | || ||||| || ||| | | || Sbjct 1393418 GACCAACAGCGTCTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGAC 1393359 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| || || || |||| |||| Sbjct 1393358 TACAACATCCAAAAGGAGTCTACTTTGCA-CTTG 1393326 >seq2 Length=2396783 Score = 125 bits (138), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| || || | || || || || || ||| | || || || Sbjct 893037 AAAATGC---AGATTTTCGTCAAGACCTTAACCGGTAAGACTATTACCTTGGAAGTCGAG 892981 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| ||||||||||| || ||||| |||||||| ||||| |||||||| ||||| Sbjct 892980 TCCTCCGACACCATCGACAATGTCAAGTCCAAGATTCAAGACAAGGAAGGAATTCCTCCT 892921 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||| ||||| | || || || || || || || ||||| || || ||||| | || Sbjct 892920 GACCAACAACGTTTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACTCTGTCTGAC 892861 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||| |||| || || || || |||| || ||| ||||| | ||| Sbjct 892860 TACAACATCCAGAAGGAGTCTACTTTGCACCTGGTTCTGAGATTGAGA 892813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358