Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Komagataella_20phaffii_20[genbank_20GCA_5F001708085.1_202016-08-12] 7 sequences; 9,397,609 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq2 91.5 1e-13 seq4 82.4 7e-11 >seq3 Length=2260675 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| || ||||| ||||| || | || | | || || | ||||| || || || Sbjct 1393341 CTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACCATCCTCCAATTGCTTACCAGCAAA 1393400 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| ||||||||||| | |||| | |||||||||| ||| | || | | ||| Sbjct 1393401 GATCAGACGCTGTTGGTCAGGAGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTGACGT 1393459 Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | || ||||||| ||||||||||||| || || || ||||| || || ||||||| Sbjct 1393460 TGTCAATAGTGTCGGAAGACTCCACCTCCAAGGTGATAGTCTTACCGGTAAGGGTCTTTA 1393519 Query 41850 CGAAAATCTGCATGTT 41865 ||||||| ||||| || Sbjct 1393520 CGAAAATTTGCATTTT 1393535 >seq2 Length=2396783 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| || ||||||||| ||||| ||||| || || || | |||| || Sbjct 892826 ACCAGGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCAGACAGAGTTCTACCGTCTTCC 892885 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| || || || |||| || |||||||| | |||| | |||||||| || Sbjct 892886 AGTTGCTTACCAGCAAAAATCAAACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCT-TG 892944 Query 41774 ATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | | || | ||| || | ||| |||||| ||||| || |||| || || || Sbjct 892945 AATCTTGGACTTGACATTGTCGATG--GTGTCGGAGGACTCGACTTCCAAGGTAATAGTC 893002 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| || | ||||| |||||||||||||| || Sbjct 893003 TTACCGGTTAAGGTCTTGACGAAAATCTGCATTTT 893037 >seq4 Length=1814878 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 ||| |||| || || ||| ||||| ||||| || || || || || || | |||| Sbjct 1483800 TAATACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTACCGTC 1483859 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| || ||||| |||| || || ||||| | |||| | |||||||| Sbjct 1483860 TTCCAGTTGCTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATACCTTCCTTGTC 1483919 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| | || | || ||| || ||| || ||||| ||||| | || || | Sbjct 1483920 T-TGAATCTTAGATTTGACGTTATCAATAGTATCTGATGACTCTACCTCAAGAGTGATAG 1483978 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| || || ||||| |||||||||||||| Sbjct 1483979 TCTTACCAGTTAGAGTCTTGACGAAAATCTGCAT 1484012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303959548400