Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26]
8 sequences; 10,264,457 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq4 134 2e-26
seq6 111 2e-19
seq8 98.7 1e-15
>seq4
Length=1192607
Score = 134 bits (148), Expect = 2e-26
Identities = 114/138 (83%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| || || || ||||| ||||| |||||||| ||| || ||||| ||||| ||
Sbjct 499301 CCACCTCTTAGCCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGA-ATATTGTAATCAGA 499243
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||||||| ||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct 499242 AAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGG 499183
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 499182 AATACCTTCCTTGTCTTG 499165
Score = 134 bits (148), Expect = 2e-26
Identities = 114/138 (83%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| | ||| || ||||| ||||| |||||||| ||| || ||||| ||||| ||
Sbjct 499985 CCACCTCTTAATCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGA-ATATTGTAATCAGA 499927
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||||||| ||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct 499926 AAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGG 499867
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 499866 AATACCTTCCTTGTCTTG 499849
Score = 129 bits (142), Expect = 9e-25
Identities = 113/138 (82%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| || || || |||| ||||| |||||||| ||| || ||||| ||||| ||
Sbjct 498845 CCACCTCTTAGCCTCAAAACCAGGTGTAAGGTAGATTCCTTTTGA-ATATTGTAATCAGA 498787
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||||||||||| ||| || || || || ||||| |||||||||||||| ||||| || ||
Sbjct 498786 AAGAGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGG 498727
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| ||||| ||
Sbjct 498726 AATACCTTCCTTATCCTG 498709
Score = 125 bits (138), Expect = 1e-23
Identities = 112/138 (81%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| ||||| || ||||||||||||||||| || ||| || || || || || ||
Sbjct 499529 CCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 499471
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| ||||||| ||| || ||||| || || || |||||||||||||| || || || ||
Sbjct 499470 AAGCGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGG 499411
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 499410 AATACCTTCCTTGTCTTG 499393
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| ||||| || ||||||||||||||||| || || || || || || |||
Sbjct 499073 CCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 499014
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| ||||||| ||| || || || || ||||| ||||||| ||||||||| || || |||
Sbjct 499013 AGCGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGA 498954
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 498953 ATACCTTCCTTATCCTG 498937
>seq6
Length=1504611
Score = 111 bits (122), Expect = 2e-19
Identities = 109/138 (79%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
|||||||| | ||| || ||||| || || |||||||| ||| || || || || || ||
Sbjct 86299 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTTTGA-ATGTTGTAGTCAGA 86241
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||||||| ||| || ||||| || |||||||| ||||||||||| || || |||||
Sbjct 86240 CAAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGG 86181
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| || |||||
Sbjct 86180 AATACCTTCCTTGTCTTG 86163
>seq8
Length=1564113
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/230 (67%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | ||| || ||||| || || ||||| || || || || || || ||
Sbjct 561006 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 561065
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| |||||||| ||| || ||||| || |||||||| ||||||||||| || || || ||
Sbjct 561066 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 561125
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| || || || ||||| ||| || ||| || |||
Sbjct 561126 ATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCAGAAGACTCGACT 561185
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
|| || || ||||| ||||| ||||| || |||| || |||||||| ||
Sbjct 561186 TCAAGGGTAATTGTCTTACCGGTTAAGGTCTTAACAAAAATTTGCATCTT 561235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743526325647360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |