Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq6 98.7 8e-16 seq4 86.0 5e-12 >seq8 Length=1564113 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||||| || |||||| || ||||||||||| | Sbjct 561006 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 561065 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | || |||| ||| || || || || ||||| | |||||||| || | Sbjct 561066 AAAGTT--CTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 561123 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| || || ||| || | | |||| | ||| | Sbjct 561124 GGATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCAGAAGACTCGA 561183 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 | || | |||||| ||||| || || | ||||| ||||| |||||||| ||| || Sbjct 561184 CTTCAAGGGTAATTGTCTTACCGGTTAAGGTCTTAACAAAAATTTGCATCTTGGCT 561239 >seq6 Length=1504611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || |||||||||| || ||||| |||||||||||||| | Sbjct 86299 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 86240 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || |||| ||| || || || || ||||| | |||||||| |||| Sbjct 86239 AAGGTT--CTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGAG 86182 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||| || ||| || | | | |||| | || | Sbjct 86181 GAATACCTTCCTTGTCTTGAATCTTAGACTTGACGTTGTCAATGGTGTCTGAAGATTCGA 86122 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | |||| ||||| ||||| || |||| ||||||||||| Sbjct 86121 CTTCCAAAGTAATGGTCTTACCAGTCAAGGTCTTCACAAA 86082 >seq4 Length=1192607 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | ||| || |||||||| |||||| |||||| || ||||||||| || Sbjct 499757 CCACCTCTTAGTCTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAG----TC 499702 Query 45170 AGTTGGCGAT----CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGG 45225 || ||| | | || |||| || || |||||||| |||| | || ||||| || Sbjct 499701 AGAAAGCGTTCTGCCATCCTCCAACTGCTTACCGGCGAAAATCAGTCTTTGCTGGTCAGG 499642 Query 45226 AGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTC 45285 || | ||| |||||||| ||| || ||||| | | |||| | ||| Sbjct 499641 TGGGATACCTTCCTTGTCTTGAATCTTGGATTTAACGTTGTCTATCGTGTCAGAAGACTC 499582 Query 45286 CACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || || ||||| || || | |||||| || || || ||||| Sbjct 499581 AACCTCCAAAGTGATGGTCTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 499531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075161480168