Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq1 150 2e-31 seq7 129 7e-25 >seq2 Length=1086951 Score = 248 bits (274), Expect = 1e-60 Identities = 756/1155 (65%), Gaps = 24/1155 (2%) Strand=Plus/Plus Query 62939 CAATGCAACAGATGCCAGATTACACACGGC---TACCTCATTAGCATCCGCATATTGTAT 62995 |||||||||||| |||| ||||||||||| | |||| | | | || | | Sbjct 390193 CAATGCAACAGAAGCCAAGTTACACACGGCAGTTTCCTCTGGGGAA---GAGTACTCGAC 390249 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 || ||| || | ||| | ||||||| || || | || | ||| ||| |||| | Sbjct 390250 GATTTCACAACACAAGTTAGAAGACTTGATGGTACCAAGGTTCTTTTGGTTAGACTTTCT 390309 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 |||||| | ||| || |||| |||||||||||||| ||||| |||||| ||||| ||| Sbjct 390310 GTTACAAGAATCTTTGTAAATCATGAATGGAGTACCGGTTTCCGTCTGAGCTTCTAGAAT 390369 Query 63116 CGCTTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA 63174 || | ||| | | || |||| || || | ||| || | | ||||| | || Sbjct 390370 GGCATACCATA-GCTTCTGAGCTTTGATAGTC--TTTCTACCACGGCCCTCTTGCACGTA 390426 Query 63175 GAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATC 63232 || ||| || |||||| || || || | |||| | | | | ||| |||| Sbjct 390427 ACGTTCATATAAAGCTTCGAATTCATCACCATAGACATCGGCAAGACCGGGAGCTTCACT 390486 Query 63233 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63292 || | | ||| | ||| || |||| || | |||| ||||| || | ||| |||| Sbjct 390487 AGGGGAAAACAAGGTCCATTCACCGTTCTCTTGAACTCTCTTCATGAACAAATCTGGAAC 390546 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| ||||| || | |||||| | | ||| || || || || | |||| | Sbjct 390547 CCATAGAGCAGGGAACAAATCTCTGGCACGGATTTCTTCCTTACC-GTGGT-TTTTCCGG 390604 Query 63353 AT--CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 || ||| || | | |||||||| ||||| ||||| ||||| || || | | | || Sbjct 390605 ATGTCGACAAAGTCGAAGATATCAGAGTGCCATGGTTCTAAGTAAATTGCAAAAGCACCT 390664 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 || | ||||| || || ||||| | ||| | ||| ||||| || || || | | ||| Sbjct 390665 GGTCTCTTGTTGCCACCTTGATCAACGTAACGAGCAGTGTTGTTGTATACACGAACCATG 390724 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || |||||||| || || |||| |||||||| | || ||| || | | |||||| Sbjct 390725 GGGATAATACCATTCGAAGTACCGTTGGTACCTGCAATGTAGGAGCCTGTAGAACGAATG 390784 Query 63531 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 || || | || || || || || | || ||||| | || ||| ||| || Sbjct 390785 TTGTGGATGTGCAATCCGATACCGCCCGCAGTCTTGGAGATCATGGCACATTCTTTCAAA 390844 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 || || ||||| ||||| ||| || || ||||| | || |||||| |||||| Sbjct 390845 GTATCGTAGATACCTTCGATGGAGTCCTCTTTCATGGCTACCAGGAAACAGGAAGACATC 390904 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || || ||| ||| || || || ||||| || || || ||||| || || || || | Sbjct 390905 TGAGGATGAGGAGTACCGGCGTTGAATAACGTGGGCGATGCGTGAGTGAAATATCTTAGA 390964 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | |||||||| || || | || || || || | || || || || || Sbjct 390965 GACATGAGATTGTAGGTTTCGAGCACTCTTTCGATGTCGCGGCCGTGGATACCGACGGCA 391024 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | || |||||||| | ||| | | ||| | || | ||||| Sbjct 391025 ACACGCATGATCAAATGCTGAGGACGTTCTGCGACTTTACCATCGATACGGAGTAAGTAC 391084 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 63890 || ||| | || || |||||||||||||||||| ||||||| ||||| | |||| Sbjct 391085 GAACGTTCTAGGGTCTTGAAACCAAAATAGTTGTATTGGAAGTCTCTGTCGTAGACAATA 391144 Query 63891 ACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAA---TACTT-GAAAT 63946 | || ||||||| ||| || | | | || || ||| |||| | ||| ||||| Sbjct 391145 GCAGAGTTGAGCTCATCTTTGTGCTCCATGACAAT-TCC---GTAAACTTCCTTGGAAAT 391200 Query 63947 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 64006 || || || || | ||||||||||| || ||||||| | | ||||| || ||| | Sbjct 391201 CATGGGCGAGTGAATTCCATTTTTAGGGTTCACATAGTGGTACAAATCGCTCACCACCTG 391260 Query 64007 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT 64066 ||| | || | |||| ||| || || || || || || | ||| ||||||| | Sbjct 391261 CGAAAACTGCTTGGTAGTTTGCTTATGCAGGTTGGAAATCGCAAGTCTAGCGGCTAACGT 391320 Query 64067 GGCATAATCCGGATG 64081 ||||| || || || Sbjct 391321 CGCATAGTCAGGGTG 391335 >seq1 Length=762788 Score = 150 bits (166), Expect = 2e-31 Identities = 485/734 (66%), Gaps = 19/734 (3%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| ||| | |||||||| || || || || || |||| || || ||| Sbjct 618925 TTTTGGTAGTCAGACACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTT 618984 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATT-CAGAAAT 33409 ||||| ||||| || || || ||||| ||| |||| |||| | | |||| || | Sbjct 618985 TCCATAAAATCGAATGGGTTCGTAACGTTG-AAATACTTTTGATTGCCAAGAGCAACTAG 619043 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||| || || || ||||| | |||| ||||| | || ||||| || | || Sbjct 619044 CAGTCTGTCGGCAACAAATTCAACATATTGGTTCATTAGGTCGGCGTTCATACCAAGTAG 619103 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAAT-TCTTGTTCAATGGATACCGCATTTGTTATAA 33528 ||||| || || | | | | || |||| ||| || || || | || || | Sbjct 619104 GGACACTGGTAGGGCATCGATGAAATATCTCTT-TTCGATTTCGACAGCCTCAGTAATGA 619162 Query 33529 TAAATCT-AACGGTTTCTTCACTCGGTGGATGTAAT--AAATGTTTAAACATCAAACATG 33585 | ||| ||| | | | | || | | ||| | || || ||| | | ||||| Sbjct 619163 TTC-TCTCAACAATCTTTGGA-TCAG-GCTTGTTCTTCAAGTGCGCAAATAGAAGACATG 619219 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | ||||| ||| |||||||||||||| | ||||| || ||||| ||||| || |||| Sbjct 619220 CAAAATCAGTGTGAAGACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAGACCGG 619279 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| | || ||| || ||||| || || | || || |||||||| ||||| | | Sbjct 619280 GCATCAAACCTTTCTTCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAAAACAC 619339 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT--GTCATGTATCC 33762 |||| || ||||||||||| | | ||||||| || | | | | || ||| || |||| Sbjct 619340 CTTCCACGGCAGCAAAGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGTCCTGGATCC 619399 Query 33763 A-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 | || || ||||| |||||||||| || | ||| || |||| |||||||| || Sbjct 619400 ATCTGATG-GCCCATTCGGCCTTCTCCTTGATCTGAGGAATATTTTCAATGGCATTGAAT 619458 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || | | | || || ||||| | || || || |||| ||| || | || Sbjct 619459 AGGAAATCGCTCTCCTTGGGGTCTTTGATGTAGGTGTCAATCAGCAGAGAGTAGGTCTCG 619518 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || |||||||| || ||||| || ||||| || || | || || | || || Sbjct 619519 GAGTGGATGTTTTCCATCATGATCTGGAACCCGTAAAAGCACTTGGCTTCTGGGATTTGA 619578 Query 33942 ACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 ||||| | | || ||||| | || || || || || || || || || |||| Sbjct 619579 ACTTCGGCTGAGAA--GTTCTCGACCAAGTTCTCGTTGACAATACCGTCGGACGCAGCAA 619636 Query 34000 AAAACGCCAATACA 34013 | || ||||| ||| Sbjct 619637 AGAATGCCAACACA 619650 >seq7 Length=1626734 Score = 129 bits (142), Expect = 7e-25 Identities = 499/767 (65%), Gaps = 34/767 (4%) Strand=Plus/Plus Query 62766 TCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCT 62825 || ||||||||||| |||||||| | | |||||||| |||| | || | ||||||| Sbjct 861538 TCAGCTAATCCTTGCACACCAATTGCCAAAGGTCTATTTCTCATGTTGCTGTATTCAGCT 861597 Query 62826 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTG 62885 ||| || |||||| | | |||||| || | | | |||||| || | || Sbjct 861598 TCTTCAACAGGATAGTCACAAATATCAATGACAAGGTCCAAATTTCTCGTAACAAGCTTT 861657 Query 62886 ACCACATCCTTCAGTTTGAGAAAATCAAA--TCGC-------CCATCTATT---ACAAAC 62933 || |||| | || | |||||||| | || || || || ||||| Sbjct 861658 ACAACATGGTGGAGCATCTTGAAATCAAACTTTGCTACTGTACCTTCGATCTTCACAAAA 861717 Query 62934 ATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTG 62992 | | ||||| ||||| ||||| ||||| |||| ||||| | | || ||||| Sbjct 861718 CTAGGGAGAGCAACTGATGCAAGATTGCACACAGCTATCTCATCTGG-TGAGCTGTATTG 861776 Query 62993 TATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTT 63052 | ||||| ||| || || |||| ||||| || | |||| |||||| || Sbjct 861777 AACAATCTCGCAGCAGAGGTTGGATGACTTAATAGTACCGAGGTTTTTTTGATTTGATTT 861836 Query 63053 TTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTAT 63112 ||| || || | ||||||||| || ||||| ||| || || |||| ||| || || Sbjct 861837 TTTATTGCAGGAATCCTTATATAGCATGAAAGGACCGCCGGTCTCAACTTGACTTTGTAA 861896 Query 63113 AATCGCTTTCCAGACGACTCGAGCCTTTATTATA--GATTTGTATCTCCTTTCTCTTTCG 63170 ||| | |||| | | | ||||| | | | || ||||| |||| || | Sbjct 861897 AATTTCGCTCCAAAGCTCCTGCGCCTTAACTGTCTTGACCGGTATCAACTTTTGCT--CA 861954 Query 63171 TATAGAGT-ATACAATCGTTCGAACTCGTCTCCCCA--AACATTGTCCAATCTAGGACAT 63227 || ||| | ||| |||| ||||||||| || || | || |||| || | ||| | Sbjct 861955 TA-AGATTCATATAATCTTTCGAACTCTTCACCGTAGCAATCTTGT--AAACCAGGTGCT 862011 Query 63228 TCATCCGGACACATCAACGAC--CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63285 || ||||| | | || ||| || ||| | | || || || || |||||||| | | Sbjct 862012 TCGTCCGGGGAAA--AAAGACTCCAGTCTTCATTATTCTCAACGCGCTTCATAAATAAGT 862069 Query 63286 CAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTC 63344 |||||||||| ||||| ||| || ||||| | || ||| ||| || ||||| ||| Sbjct 862070 CAGGAATCCAGAGAGC-ATAGAAAAGATCCCGTGCTCTCAATTCTTCTTTTCCATGGTTC 862128 Query 63345 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63404 || ||| | | || | | ||| ||| ||||||| || || | ||||||| || | Sbjct 862129 TTCCGAAGTTGTAAAAAGTCAAAAATGTCACAATGCCAAGGCTCTAGGTATATG--CAAA 862186 Query 63405 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | | || |||| || || || || ||||| | ||| | ||| ||||| || |||| | Sbjct 862187 AGGCACCCGGCCTCTTATTCCCACCTTGATCAACGTAGCGAGCTGTGTTGTTGAAAACAC 862246 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 | ||| |||| | ||| || || | ||||| | ||| || ||| Sbjct 862247 GTAGCATAGGAACCAGACCATTCGAAGTGCCATTTGAACCTGAAATA 862293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817537018240