Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 147 2e-30 seq1 113 4e-20 >seq2 Length=1086951 Score = 147 bits (162), Expect = 2e-30 Identities = 348/526 (66%), Gaps = 0/526 (0%) Strand=Plus/Plus Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||| || ||||| || ||||||| |||| || |||||| ||| | |||||| || Sbjct 390529 CATGAACAAATCTGGAACCCATAGAGCAGGGAACAAATCTCTGGCACGGATTTCTTCCTT 390588 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || || || | | | | ||| ||||| ||||||| |||||||||||||| || Sbjct 390589 ACCGTGGTTTTTCCGGATGTCGACAAAGTCGAAGATATCAGAGTGCCATGGTTCTAAGTA 390648 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 ||| | | || |||||||| || | || || |||| || || | | | ||||| || Sbjct 390649 AATTGCAAAAGCACCTGGTCTCTTGTTGCCACCTTGATCAACGTAACGAGCAGTGTTGTT 390708 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 |||| | | ||| || | |||||||| || | ||||| |||| | || || | Sbjct 390709 GTATACACGAACCATGGGGATAATACCATTCGAAGTACCGTTGGTACCTGCAATGTAGGA 390768 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 || ||| || || || || |||||| || || || ||| || || || | Sbjct 390769 GCCTGTAGAACGAATGTTGTGGATGTGCAATCCGATACCGCCCGCAGTCTTGGAGATCAT 390828 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 || |||| ||| || ||||| | |||||||| || ||| || || || | || | Sbjct 390829 GGCACATTCTTTCAAAGTATCGTAGATACCTTCGATGGAGTCCTCTTTCATGGCTACCAG 390888 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 ||||| |||||| ||||| ||||| |||||||| ||||| || || ||||| || Sbjct 390889 GAAACAGGAAGACATCTGAGGATGAGGAGTACCGGCGTTGAATAACGTGGGCGATGCGTG 390948 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 |||| || || |||| ||| || ||||| | || || || || | ||| Sbjct 390949 AGTGAAATATCTTAGAGACATGAGATTGTAGGTTTCGAGCACTCTTTCGATGTCGCGGCC 391008 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 ||| ||||| | | || | ||| | || ||| || || | |||| Sbjct 391009 GTGGATACCGACGGCAACACGCATGATCAAATGCTGAGGACGTTCT 391054 >seq1 Length=762788 Score = 113 bits (124), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||||||| || | ||| |||||||| | ||||| |||||||| || |||| Sbjct 619215 ACATGCAAAATCAGTGTGAAGACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAG 619274 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 ||||||||||| ||| || |||| ||| || ||||| ||||| || || || ||||| Sbjct 619275 ACCGGGCATCAAACCTTTCTTCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAA 619334 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA-----CCTTGTTGCTA 11803 | || ||||| || ||||| || || | ||| ||| || ||| ||| | || Sbjct 619335 AACACCTTCCACGGCAGCAAAGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGTCCTG 619394 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCT 11834 | |||||| | ||||||| || || |||| Sbjct 619395 G--ATCCATCTGATGGCCCATTCGGCCTTCT 619423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524753147520