Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq8 109 5e-19 >seq4 Length=1192607 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| | ||| || |||| ||| || ||||| |||||||||||||||||||| | Sbjct 499301 CCACCTCTTAGCCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAA 499242 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | ||||||| || ||||| || |||| | ||| ||||| || || Sbjct 499241 AGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGGA 499182 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | || || ||||| ||| || ||| || | | ||| ||||| ||| | || Sbjct 499181 ATACCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATGGTATC-AGAGGATTCGAC 499123 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | |||||| || |||||||| ||||| ||||| ||||| ||||| Sbjct 499122 TTCCAAGGTAATAGTCTTACCTGTCAAAGTCTTGACGAAAATCTGCAT 499075 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || || |||| || || || |||| ||| || ||||| |||||||||||||||||||| Sbjct 499988 TTACCACCTCTTAATCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCA 499929 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| || | ||||||| || ||||| || |||| | ||| ||||| || Sbjct 499928 GAAAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGT 499869 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || || ||||| ||| || || || | | ||| ||||| ||| | | Sbjct 499868 GGAATACCTTCCTTGTCTTGAATCTTGGACTTAACGTTGTCGATGGTATC-AGAGGATTC 499810 Query 18992 G-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | ||| | ||| ||||| ||||| |||| ||| ||||| || || ||||| Sbjct 499809 GACTTCCAAGGTGATGGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499759 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| | ||| || |||| ||| || ||||| |||||||||||||||||||| | Sbjct 498845 CCACCTCTTAGCCTCAAAACCAGGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAA 498786 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | ||||||| ||| ||||| || |||| | ||| || ||||| || Sbjct 498785 AGAGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGA 498726 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || ||| || | | ||| ||||| | || Sbjct 498725 ATACCTTCCTTATCCTGGATCTTGGATTTGACGTTGTCGATGGTATCAGAGGATTCAACC 498666 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCTCTTA 19054 || | || ||||| || || |||||||| ||||| ||||| |||||||| | || || Sbjct 498665 TCCAGAGTGATGGTCTTGCCGGTTAAAGTCTTGACGAAAATCTGCATTTTTCAGCT-GTA 498607 Query 19055 TAAAT 19059 ||||| Sbjct 498606 TAAAT 498602 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| ||| | ||| ||||||||||| || ||||| || | | ||| || | Sbjct 499745 CTCAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTTCTGCCA 499686 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||||| ||| ||||| || |||| ||||| ||||| || || | || || ||| Sbjct 499685 TCCTCCAACTGCTTACCGGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATACCTTCCTTG 499626 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATG 19006 || ||| || ||| || | | | | || || || ||| || | || ||| Sbjct 499625 TCTTGAATCTTGGATTTAACGTTGTCTATCGTGTCAGAAGACTCAACCTCCAAAGTGATG 499566 Query 19007 GTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| |||||||| ||||| ||||| ||||| Sbjct 499565 GTCTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 499531 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 18827 CTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCG 18886 || || |||| || || |||||||||||||| || ||||| || | | ||| || | Sbjct 499061 CTCAAAACCAAATGTAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTTCTGCCA 499002 Query 18887 TCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTG 18946 ||||||| ||| ||||| || |||| ||||| ||||| || || | || || || Sbjct 499001 TCCTCCAACTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGAATACCTTCCTTA 498942 Query 18947 TCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAAT 19005 || || || ||| || | | ||| ||||| ||| | || ||| | ||| || Sbjct 498941 TCCTGGATCTTGGATTTAACGTTGTCGATGGTATC-AGAGGATTCGACTTCCAAGGTGAT 498883 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| ||||| |||| ||| ||||| || || ||||| Sbjct 498882 GGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 498847 >seq8 Length=1564113 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| |||||| |||||||||||||| || ||||| || | | Sbjct 561006 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 561065 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || |||| || ||||| ||| | || | ||| || || || || Sbjct 561066 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 561125 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| || || || || | | ||| ||| || || ||| | Sbjct 561126 ATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCAGAAGACTCGACT 561185 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | |||||| || ||||| ||||| || || |||||||||||||| || Sbjct 561186 TCAAGGGTAATTGTCTTACCGGTTAAGGTCTTAACAAAAATTTGCATCTT 561235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572759579152