Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26]
8 sequences; 10,264,457 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1 136 3e-27
>seq1
Length=762788
Score = 136 bits (150), Expect = 3e-27
Identities = 464/712 (65%), Gaps = 16/712 (2%)
Strand=Plus/Plus
Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934
||||| ||||| || ||||| || || || | || ||||| |||||||||||||||||
Sbjct 618940 ACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTTTCCATAAAATCGAAT 618999
Query 12935 GGATTTTTCGAACAAT--AGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAA 12992
|| || | ||| | | || |||| | || | | | || || |||||| ||||
Sbjct 619000 GGGTTCGT--AACGTTGAAATACTTTTGATTGCCAAGAGCAACTAGCAGTCTGTCGGCAA 619057
Query 12993 CAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAG 13052
|||| || | || || ||||||| || |||||| || | || || || | |
Sbjct 619058 CAAATTCAACATATTGGTTCATTAGGTCGGCGTTCATACCAAGTAGGGACACTGGTAGGG 619117
Query 13053 CTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGT 13112
| || | ||| | | ||||| || || || || || ||| || ||||| | ||
Sbjct 619118 CATCGATGAAATATCTCTTTTCGATTTCGACAGCCTCAGTAATGAT-TCTCTCA--ACAA 619174
Query 13113 TCTCTAATGGAGGATT--TGATAGA-TGCTTAAACATCATACATGCAAAATCACAGTGCA 13169
||| | ||| || | | | ||| ||| | | ||||||||||||| ||| |
Sbjct 619175 TCTTTGGATCAGGCTTGTTCTTCAAGTGCGCAAATAGAAGACATGCAAAATCAGTGTGAA 619234
Query 13170 ATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTT 13229
|| || ||||| | |||||||| || || || |||||||| ||||| | ||| |
Sbjct 619235 GACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAGACCGGGCATCAAACCTTTCT 619294
Query 13230 TTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAA 13289
| || | ||| || ||||| ||||| || || || || || | ||||| || || ||||
Sbjct 619295 TCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAAAACACCTTCCACGGCAGCAA 619354
Query 13290 ACGCTATCAACCTTTCACC--ATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCA 13347
| || | ||| || || | ||| | || || | || ||||| | |||||||
Sbjct 619355 AGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGT--CCTGGATCCATCTGATGGCCCA 619412
Query 13348 GTTTG-CTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttttttt 13406
| | ||| | || | | || |||||||| || || || |||| ||| | |
Sbjct 619413 TTCGGCCTTCTCCTTGATCTGAG-GAATATTTTCAATGGCATTGAATAGGAAATCGCTCT 619471
Query 13407 CCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTT 13466
|||| |||| || || || || |||| | || | || || || || ||||
Sbjct 619472 CCTTGGGGTCTTTGATGTAGGTGTCAATCAGCAGAGAGTAGGTCTCGGAGTGGATGTTTT 619531
Query 13467 CCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAA 13526
||||| || ||||| || ||||| || | || |||| | |||||||||| | |
Sbjct 619532 CCATCATGATCTGGAACCCGTAAAAGCACTTGGCTTCTGGGATTTGAACTTCGGCTGAGA 619591
Query 13527 ATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC 13578
| | || | ||||| ||||| || || ||||| |||||||| || ||
Sbjct 619592 AGTTCTCGACCAAGTTCTCGTTGACAATACCGTCGGACGCAGCAAAGAATGC 619643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430982357979216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |