Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26]
8 sequences; 10,264,457 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq4 163 7e-35
seq6 125 2e-23
seq1 96.9 8e-15
>seq4
Length=1192607
Score = 163 bits (180), Expect = 7e-35
Identities = 176/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||||||| | || || ||||| |||||||| || |||||||| || |||
Sbjct 498848 ATACCACCTCTTAGCCTCAAAACCAGGTGTAAGGTAGATTCCTTTTGAATATTGTAATCA 498789
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || | || || ||||| ||||| | || |||||||||||
Sbjct 498788 GAAAGAGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAATCTTTGTTGATCAGGT 498729
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| | ||| || || || | |||||| | |||
Sbjct 498728 GGAATACCTTCCTTATCCTGGATCTTGGATTTGACGTTGTCGATGGTATCAGAGGATTCA 498669
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| || || | || || || || |||||||||||
Sbjct 498668 ACCTCCAGAGTGATGGTCTTGCCGGTTAAAGTCTTGACGAAAATCTGCATTTT 498616
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||||||| | || | ||||| |||||||| || |||||||| || |||
Sbjct 499304 ATACCACCTCTTAGCCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCA 499245
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || | ||| || || || ||||| | || || || |||||
Sbjct 499244 GAAAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGT 499185
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||| | ||| ||||| || | |||||| | |||
Sbjct 499184 GGAATACCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATGGTATCAGAGGATTCG 499125
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | |||||||||||||| || | || || || || ||||||||
Sbjct 499124 ACTTCCAAGGTAATAGTCTTACCTGTCAAAGTCTTGACGAAAATCTGCAT 499075
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||||||| || | || | |||||| ||||| || || ||||| || ||||||
Sbjct 499532 ATACCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCA 499473
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || ||||| || || || | ||| || || || ||||| | || ||||| || ||
Sbjct 499472 GAAAGCGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGT 499413
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || |||||||| | ||| || || |||| || || || ||
Sbjct 499412 GGAATACCTTCCTTGTCTTGAATCTTGGATTTGACGTTGTCTATCGTGTCAGAAGACTCA 499353
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | |||||||||||||| || || || || || || ||||||||
Sbjct 499352 ACCTCCAAAGTAATAGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499303
>seq6
Length=1504611
Score = 125 bits (138), Expect = 2e-23
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || |||||||| || ||||| || |||||||| | ||||| || ||||| | |||
Sbjct 86275 TGCAAGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCATCTTCCAATTGC 86216
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || | || ||||| |||||||| || ||||| || || ||||||||
Sbjct 86215 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 86156
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || || || || | ||| || || ||| || || | ||||| |||||||||||
Sbjct 86155 GACTTGACGTTGTCAATGGTGTCTGAAGATTCGACTTCCAAAGTAATGGTCTTACCAGTC 86096
Query 104537 AGTGTTTTTACAAA 104550
| || || |||||
Sbjct 86095 AAGGTCTTCACAAA 86082
>seq1
Length=762788
Score = 96.9 bits (106), Expect = 8e-15
Identities = 277/421 (66%), Gaps = 5/421 (1%)
Strand=Plus/Minus
Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936
|| ||||| || ||||| || | || ||||| |||| || || || || || |||
Sbjct 619625 GACGGTATTGTCAACGAGAACTTGGTCGAGAACTTCTCAGCCGAAGTTCAAATCCCAGAA 619566
Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996
|||| || |||||||| |||||||| || ||||| || || || |||| ||| |
Sbjct 619565 GCCAAGTGCTTTTACGGGTTCCAGATCATGATGGAAAACATCCACTCCGAGACCTACTCT 619506
Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056
|| | || || || || || | || ||| || | | ||||| | | ||
Sbjct 619505 CTGCTGATTGACACCTACATCAAAGACCCCAAGGAGAGCGATTTCCTATTCAATGCCATT 619446
Query 269057 AGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-- 269113
|| ||| || | | | | || | |||||||| | | |||||| | ||
Sbjct 619445 GAAAATATTC-CTCAGATCAAGGAGAAGGCCGAATGGGCCATCAGATGGATCCAGGACGA 619387
Query 269114 AGCGCGCCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172
|| | ||| | | ||| || || || || ||||| || || |||||| | ||||| ||
Sbjct 619386 AGAGGCCCTATTTGCAGAGAGATTGGTCGCCTTTGCTGCCGTGGAAGGTGTTTTCTTCTC 619327
Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232
|| || ||||||||||| || ||| | ||||| | ||| | ||||| || |||| ||
Sbjct 619326 CGGATCCTTTGCCGCTATTTTCTGGCTAAAGAAGAAAGGTTTGATGCCCGGTCTAACGTT 619267
Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292
|||||| || | || |||| ||||| ||| | ||| || || || ||| | ||||
Sbjct 619266 CTCTAATGAGCTAATTTGCAGAGACGAGGGTCTTCACACTGATTTTGCATGTCTTCTATT 619207
Query 269293 T 269293
|
Sbjct 619206 T 619206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398281981664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |