Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq4 163 7e-35 seq6 125 2e-23 seq1 96.9 8e-15 >seq4 Length=1192607 Score = 163 bits (180), Expect = 7e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| | || || ||||| |||||||| || |||||||| || ||| Sbjct 498848 ATACCACCTCTTAGCCTCAAAACCAGGTGTAAGGTAGATTCCTTTTGAATATTGTAATCA 498789 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || | || || ||||| ||||| | || ||||||||||| Sbjct 498788 GAAAGAGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAATCTTTGTTGATCAGGT 498729 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| | ||| || || || | |||||| | ||| Sbjct 498728 GGAATACCTTCCTTATCCTGGATCTTGGATTTGACGTTGTCGATGGTATCAGAGGATTCA 498669 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| || || | || || || || ||||||||||| Sbjct 498668 ACCTCCAGAGTGATGGTCTTGCCGGTTAAAGTCTTGACGAAAATCTGCATTTT 498616 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| | || | ||||| |||||||| || |||||||| || ||| Sbjct 499304 ATACCACCTCTTAGCCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCA 499245 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || | ||| || || || ||||| | || || || ||||| Sbjct 499244 GAAAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGT 499185 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | ||| ||||| || | |||||| | ||| Sbjct 499184 GGAATACCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATGGTATCAGAGGATTCG 499125 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||||||||||| || | || || || || |||||||| Sbjct 499124 ACTTCCAAGGTAATAGTCTTACCTGTCAAAGTCTTGACGAAAATCTGCAT 499075 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | || | |||||| ||||| || || ||||| || |||||| Sbjct 499532 ATACCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCA 499473 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || || | ||| || || || ||||| | || ||||| || || Sbjct 499472 GAAAGCGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGT 499413 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||| | ||| || || |||| || || || || Sbjct 499412 GGAATACCTTCCTTGTCTTGAATCTTGGATTTGACGTTGTCTATCGTGTCAGAAGACTCA 499353 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | |||||||||||||| || || || || || || |||||||| Sbjct 499352 ACCTCCAAAGTAATAGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499303 >seq6 Length=1504611 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || |||||||| || ||||| || |||||||| | ||||| || ||||| | ||| Sbjct 86275 TGCAAGGTAGATTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCCATCTTCCAATTGC 86216 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| |||||||| || ||||| || || |||||||| Sbjct 86215 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATCTTA 86156 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | ||| || || ||| || || | ||||| ||||||||||| Sbjct 86155 GACTTGACGTTGTCAATGGTGTCTGAAGATTCGACTTCCAAAGTAATGGTCTTACCAGTC 86096 Query 104537 AGTGTTTTTACAAA 104550 | || || ||||| Sbjct 86095 AAGGTCTTCACAAA 86082 >seq1 Length=762788 Score = 96.9 bits (106), Expect = 8e-15 Identities = 277/421 (66%), Gaps = 5/421 (1%) Strand=Plus/Minus Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 || ||||| || ||||| || | || ||||| |||| || || || || || ||| Sbjct 619625 GACGGTATTGTCAACGAGAACTTGGTCGAGAACTTCTCAGCCGAAGTTCAAATCCCAGAA 619566 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 |||| || |||||||| |||||||| || ||||| || || || |||| ||| | Sbjct 619565 GCCAAGTGCTTTTACGGGTTCCAGATCATGATGGAAAACATCCACTCCGAGACCTACTCT 619506 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATG 269056 || | || || || || || | || ||| || | | ||||| | | || Sbjct 619505 CTGCTGATTGACACCTACATCAAAGACCCCAAGGAGAGCGATTTCCTATTCAATGCCATT 619446 Query 269057 AGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-- 269113 || ||| || | | | | || | |||||||| | | |||||| | || Sbjct 619445 GAAAATATTC-CTCAGATCAAGGAGAAGGCCGAATGGGCCATCAGATGGATCCAGGACGA 619387 Query 269114 AGCGCGCCT-TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 || | ||| | | ||| || || || || ||||| || || |||||| | ||||| || Sbjct 619386 AGAGGCCCTATTTGCAGAGAGATTGGTCGCCTTTGCTGCCGTGGAAGGTGTTTTCTTCTC 619327 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || || ||||||||||| || ||| | ||||| | ||| | ||||| || |||| || Sbjct 619326 CGGATCCTTTGCCGCTATTTTCTGGCTAAAGAAGAAAGGTTTGATGCCCGGTCTAACGTT 619267 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292 |||||| || | || |||| ||||| ||| | ||| || || || ||| | |||| Sbjct 619266 CTCTAATGAGCTAATTTGCAGAGACGAGGGTCTTCACACTGATTTTGCATGTCTTCTATT 619207 Query 269293 T 269293 | Sbjct 619206 T 619206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398281981664