Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 248 1e-60 seq1 152 6e-32 seq7 125 9e-24 >seq2 Length=1086951 Score = 248 bits (274), Expect = 1e-60 Identities = 703/1069 (66%), Gaps = 12/1069 (1%) Strand=Plus/Plus Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 ||||||| || || | || | ||| ||| |||| ||||||| | ||| || |||| | Sbjct 390273 ACTTGATGGTACCAAGGTTCTTTTGGTTAGACTTTCTGTTACAAGAATCTTTGTAAATCA 390332 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCC 63086 ||||||||||||| ||||| |||||| ||||| ||| || | ||| | | || |||| Sbjct 390333 TGAATGGAGTACCGGTTTCCGTCTGAGCTTCTAGAATGGCATACCATAGCTTCT-GAGCT 390391 Query 63087 TTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACT 63144 || || | ||| || | | ||||| |||| || ||| || |||||| | Sbjct 390392 TTGATAGT--CTTTCTACCACGGCCCTCTTGCACGTAACGTTCATATAAAGCTTCGAATT 390449 Query 63145 CGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 | || || | |||| | | | || ||| |||| || | | ||| | ||| || | Sbjct 390450 CATCACCATAGACATCGGCAAGACCGGGAGCTTCACTAGGGGAAAACAAGGTCCATTCAC 390509 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 ||| || | |||| ||||| || | ||| |||| ||| ||||| || | ||||| Sbjct 390510 CGTTCTCTTGAACTCTCTTCATGAACAAATCTGGAACCCATAGAGCAGGGAACAAATCTC 390569 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA--TCGAGGAACGCCATAATATC 63322 ||| | ||| || || || || | |||| || |||| || | | ||||| Sbjct 390570 TGGCACGGATTTCTTCCTTACC-GTGGT-TTTTCCGGATGTCGACAAAGTCGAAGATATC 390627 Query 63323 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63382 ||| ||||| ||||| ||||| || || | | | || || | ||||| || || ||||| Sbjct 390628 AGAGTGCCATGGTTCTAAGTAAATTGCAAAAGCACCTGGTCTCTTGTTGCCACCTTGATC 390687 Query 63383 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63442 | ||| | ||| ||||| || || || | | ||| || |||||||| || || |||| Sbjct 390688 AACGTAACGAGCAGTGTTGTTGTATACACGAACCATGGGGATAATACCATTCGAAGTACC 390747 Query 63443 ATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCC 63502 |||||||| | || ||| || | | |||||| || || | || || || Sbjct 390748 GTTGGTACCTGCAATGTAGGAGCCTGTAGAACGAATGTTGTGGATGTGCAATCCGATACC 390807 Query 63503 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCT 63562 || || | || ||||| | || ||| ||| || || || |||||||| || ||| Sbjct 390808 GCCCGCAGTCTTGGAGATCATGGCACATTCTTTCAAAGTATCGTAGATACCTTCGATGGA 390867 Query 63563 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 63622 || || ||||| | || |||||| |||||| || || || ||| || || || Sbjct 390868 GTCCTCTTTCATGGCTACCAGGAAACAGGAAGACATCTGAGGATGAGGAGTACCGGCGTT 390927 Query 63623 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63682 ||||| || || || ||||| || || || || ||| | |||||||| || || | Sbjct 390928 GAATAACGTGGGCGATGCGTGAGTGAAATATCTTAGAGACATGAGATTGTAGGTTTCGAG 390987 Query 63683 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63742 || || || || | || || || || || |||||||| | || |||||||| Sbjct 390988 CACTCTTTCGATGTCGCGGCCGTGGATACCGACGGCAACACGCATGATCAAATGCTGAGG 391047 Query 63743 TCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63802 | ||| ||| || | || | ||||| || ||| | || || ||||| Sbjct 391048 ACGTTCTGCGACTTTACCATCGATACGGAGTAAGTACGAACGTTCTAGGGTCTTGAAACC 391107 Query 63803 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATA 63862 ||||||||||||| ||||||| ||||| | |||| | |||||||| | ||| || | Sbjct 391108 AAAATAGTTGTATTGGAAGTCTCTGTCGTAGACAATAGCAGAGTTGAGCTCATCTTTGTG 391167 Query 63863 TTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAG 63921 | | || || ||| | | ||| ||||| || || || || | |||||||||| Sbjct 391168 CTCCATGACAAT-TCCGTAAACTTCCTTGGAAATCATGGGCGAGTGAATTCCATTTTTAG 391226 Query 63922 GATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGT 63981 | || ||||||| | | ||||| || ||| | ||| | || | |||| ||| | Sbjct 391227 GGTTCACATAGTGGTACAAATCGCTCACCACCTGCGAAAACTGCTTGGTAGTTTGCTTAT 391286 Query 63982 GTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 | || || || | || | ||| ||||||| | ||||| || || || Sbjct 391287 GCAGGTTGGAAATCGCAAGTCTAGCGGCTAACGTCGCATAGTCAGGGTG 391335 >seq1 Length=762788 Score = 152 bits (168), Expect = 6e-32 Identities = 483/732 (66%), Gaps = 15/732 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||| ||| | |||||||| || || || || || |||| || || ||| Sbjct 618925 TTTTGGTAGTCAGACACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTT 618984 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATT-CAGAAAT 33131 ||||| ||||| || || || ||||| || |||| |||| | | |||| || | Sbjct 618985 TCCATAAAATCGAATGGGTTCGTAACGTTG-AAATACTTTTGATTGCCAAGAGCAACTAG 619043 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 || ||| || || || ||||| | |||| ||||| | || ||||| || | || Sbjct 619044 CAGTCTGTCGGCAACAAATTCAACATATTGGTTCATTAGGTCGGCGTTCATACCAAGTAG 619103 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAAT-TCTTGTTCAATGGATACCGCATCTGTTATAA 33250 ||||| || || | | | | || |||| ||| || || || || || || | Sbjct 619104 GGACACTGGTAGGGCATCGATGAAATATCTCTT-TTCGATTTCGACAGCCTCAGTAATGA 619162 Query 33251 TAGATCT-AACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 | ||| ||| | | | | || | | || || ||| | | |||||| Sbjct 619163 TTC-TCTCAACAATCTTTGGATCAGGCTTGTTCTTCAAGTGCGCAAATAGAAGACATGCA 619221 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 ||||| ||| |||||||||||||| | |||||| || || || ||||| || |||||| Sbjct 619222 AAATCAGTGTGAAGACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAGACCGGGC 619281 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || | || ||| || ||||| || || | || || ||||| || ||||| | ||| Sbjct 619282 ATCAAACCTTTCTTCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAAAACACCT 619341 Query 33430 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT--GTCATGTATCCA- 33485 || || ||||||||||| | | ||||||| || | | | | || ||| || ||||| Sbjct 619342 TCCACGGCAGCAAAGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGTCCTGGATCCAT 619401 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || || ||||| |||||||||| || | ||| || |||| |||||||| || || Sbjct 619402 CTGATG-GCCCATTCGGCCTTCTCCTTGATCTGAGGAATATTTTCAATGGCATTGAATAG 619460 Query 33546 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 33605 | | | || || ||||| | || || || |||| ||| || | || || Sbjct 619461 GAAATCGCTCTCCTTGGGGTCTTTGATGTAGGTGTCAATCAGCAGAGAGTAGGTCTCGGA 619520 Query 33606 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 33665 || |||||||| || ||||| || ||||| || || | || || | || || || Sbjct 619521 GTGGATGTTTTCCATCATGATCTGGAACCCGTAAAAGCACTTGGCTTCTGGGATTTGAAC 619580 Query 33666 TTCTGTACAAAATCGTTC-CG-CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 ||| | | || |||| || |||| || || || || || ||||| || ||||| Sbjct 619581 TTCGGCTGAGAA--GTTCTCGACCAAGTTCTCGTTGACAATACCGTCGGACGCAGCAAAG 619638 Query 33724 AACGCCAATACA 33735 || ||||| ||| Sbjct 619639 AATGCCAACACA 619650 >seq7 Length=1626734 Score = 125 bits (138), Expect = 9e-24 Identities = 545/845 (64%), Gaps = 34/845 (4%) Strand=Plus/Plus Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTG-TGCTTCCAGGCTATCAAATGGATA 62695 ||||| || |||||||| | ||||| || | | | ||| || | || |||||| Sbjct 861460 TAAATCGTCTCGAAGATTTGTTTATTGAG-TATCGATGCCTCTATAGATTCGAATGGAAT 861518 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 || || | || ||| || ||||||||||| |||||||| | | |||||||| ||| Sbjct 861519 CTTCAAAATCATGAACAAATCAGCTAATCCTTGCACACCAATTGCCAAAGGTCTATTTCT 861578 Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 | | || | |||||||||| || |||||| | | |||||| || | | | Sbjct 861579 CATGTTGCTGTATTCAGCTTCTTCAACAGGATAGTCACAAATATCAATGACAAGGTCCAA 861638 Query 62816 ATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGC------ 62867 |||||| || | || || |||| | || | |||||||| | || Sbjct 861639 ATTTCTCGTAACAAGCTTTACAACATGGTGGAGCATCTTGAAATCAAACTTTGCTACTGT 861698 Query 62868 -CCATCTATT---ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 || || || ||||| | | ||||| ||||| ||||| || || |||| ||| Sbjct 861699 ACCTTCGATCTTCACAAAACTAGGGAGAGCAACTGATGCAAGATTGCACACAGCTATCTC 861758 Query 62924 ATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 62982 || | | || ||||| | ||||| ||| || || |||| ||||| || | Sbjct 861759 ATCTGG-TGAGCTGTATTGAACAATCTCGCAGCAGAGGTTGGATGACTTAATAGTACCGA 861817 Query 62983 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63042 |||| |||||| ||||| || || | ||||||||| || ||||| ||| || | Sbjct 861818 GGTTTTTTTGATTTGATTTTTTATTGCAGGAATCCTTATATAGCATGAAAGGACCGCCGG 861877 Query 63043 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA--GATTT 63100 | |||| ||| || || ||| | |||| | | | ||||| | | | || Sbjct 861878 TCTCAACTTGACTTTGTAAAATTTCGCTCCAAAGCTCCTGCGCCTTAACTGTCTTGACCG 861937 Query 63101 GTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCA--AACA 63158 ||||| |||| || | || | ||| |||| ||||||||| || || | || Sbjct 861938 GTATCAACTTTTGCT--CATAAGATTCATATAATCTTTCGAACTCTTCACCGTAGCAATC 861995 Query 63159 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC--CACTCTCCGTCATCCTTCA 63216 |||| || ||||| ||| ||||| | | || ||| || ||| | | || || | Sbjct 861996 TTGT--AAACCAGGTGCTTCGTCCGGGGAAA--AAAGACTCCAGTCTTCATTATTCTCAA 862051 Query 63217 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGT 63275 | || |||||||| | ||||||||||| ||||| ||| || ||||| | | ||| | Sbjct 862052 CGCGCTTCATAAATAAGTCAGGAATCCAGAGAGC-ATAGAAAAGATCCCGTGCTCTCAAT 862110 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || ||||| ||||| ||| | | || | | ||| ||| ||||||| || Sbjct 862111 TCTTCTTTTCCATGGTTCTTCCGAAGTTGTAAAAAGTCAAAAATGTCACAATGCCAAGGC 862170 Query 63336 TCCAAGTATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63393 || | ||||||| || || | || |||| || || || || ||||| | ||| | || Sbjct 862171 TCTAGGTATATG--CAAAAGGCACCCGGCCTCTTATTCCCACCTTGATCAACGTAGCGAG 862228 Query 63394 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63453 | ||||| || |||| | | ||| |||| | ||| || || | ||||| | ||| | Sbjct 862229 CTGTGTTGTTGAAAACACGTAGCATAGGAACCAGACCATTCGAAGTGCCATTTGAACCTG 862288 Query 63454 AGATA 63458 | ||| Sbjct 862289 AAATA 862293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947137705280