Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 9e-16 seq8 89.7 5e-13 >seq4 Length=1192607 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || | || || || |||| ||| || ||||||||||| |||||||| Sbjct 499985 CCACCTCTTAATCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAA 499926 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | ||||| | ||||| || ||| | || || | |||||||| || || Sbjct 499925 AGAGTTCTGCCA-TCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGG 499867 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| || || ||| | | || | ||||| | ||| |||| Sbjct 499866 AATACCTTCCTTGTCTTGAATCTTGGACTTAACGTTGTCGATGGTATCAGAGGATTCGAC 499807 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| |||||||||||||| || ||||| |||||||| Sbjct 499806 TTCCAAGGTGATGGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499759 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTC 131084 || ||||||| || ||||||||||| |||||||| || | || | || | ||||| Sbjct 499055 ACCAAATGTAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTTCTGCCA-TCCTC 498997 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 | |||||| || ||| | || | | |||||||| || || || ||||| || || Sbjct 498996 CAACTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGAATACCTTCCTTATCCTG 498937 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 ||| || || | | || | ||||| | ||| |||| || | ||| | ||| || Sbjct 498936 GATCTTGGATTTAACGTTGTCGATGGTATCAGAGGATTCGACTTCCAAGGTGATGGTCTT 498877 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||||||| || ||||| |||||||| Sbjct 498876 ACCGGTTAGAGTCTTGACGAAGATCTGCAT 498847 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTC 131084 || || |||| ||| || ||||||||||| |||||||| | || | || | ||||| Sbjct 499283 ACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAAAGAGTTCTGCCA-TCCTC 499225 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 | ||||| || ||| | || || | |||||||| || || || ||||| ||||| Sbjct 499224 CAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTG 499165 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 || || |||| | || | ||||| | ||| |||| || | ||||| || || Sbjct 499164 AATCTTGGATTTGACATTGTCGATGGTATCAGAGGATTCGACTTCCAAGGTAATAGTCTT 499105 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || | ||| || |||||||||||||| Sbjct 499104 ACCTGTCAAAGTCTTGACGAAAATCTGCAT 499075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGC-GCGAGTCCTC 131084 || ||||||| || |||||||||||||||||||| || | || | || | ||||| Sbjct 499511 ACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGCGTTCTGCCA-TCCTC 499453 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 | ||||| || ||| | || || | || ||||| || || || ||||| ||||| Sbjct 499452 CAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTG 499393 Query 131145 GATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTT 131204 || || |||| | || | || || | ||||| | || | |||| || || Sbjct 499392 AATCTTGGATTTGACGTTGTCTATCGTGTCAGAAGACTCAACCTCCAAAGTAATAGTCTT 499333 Query 131205 ACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||||||||| || ||||| |||||||| Sbjct 499332 ACCGGTTAGAGTCTTGACGAAGATCTGCAT 499303 >seq8 Length=1564113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||| | || || || || | ||| ||||||||||| |||||||| || | Sbjct 561006 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 561065 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | ||||| || || |||| || | || ||||| || || Sbjct 561066 AAAGTTCTGCCA-TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 561124 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | ||| || | ||||||| Sbjct 561125 GATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATAGTGTCAGAAGACTCGAC 561184 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || |||||||||| || || || ||||| ||||| Sbjct 561185 TTCAAGGGTAATTGTCTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 561232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012752798720