Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4 156 4e-33 seq8 147 2e-30 seq6 127 2e-24 >seq4 Length=1192607 Score = 156 bits (172), Expect = 4e-33 Identities = 183/245 (75%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 22188 ATAAGAGATATAGT-TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCG 22246 ||||||| | || |||||||| || ||| ||||| ||||| || || |||||||||| Sbjct 498588 ATAAGAGCAAAGGTATTTATACAGCTGAAAA-ATGCAGATTTTCGTCAAGACTTTAACCG 498646 Query 22247 GTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAA 22306 | || || ||||||| || || ||| || | |||||| | ||| | ||||| || | Sbjct 498647 GCAAGACCATCACTCTGGAGGTTGAATCCTCTGATACCATCGACAACGTCAAATCCAAGA 498706 Query 22307 TTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGT 22366 | || || ||||| ||||||||||| ||||||||| | | || || || || || |||| Sbjct 498707 TCCAGGATAAGGAAGGTATTCCACCTGATCAACAAAGATTGATTTTCGCTGGTAAGCAGT 498766 Query 22367 TAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAG 22426 | |||||| | | || | || |||||||| |||||||| ||||| ||| |||| | | Sbjct 498767 TGGAGGATGGCAGAACTCTTTCTGATTACAATATTCAAAAGGAATCTACCTTACACCTGG 498826 Query 22427 TTTTG 22431 ||||| Sbjct 498827 TTTTG 498831 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| || ||||| || | || | ||||| ||| || | Sbjct 499075 ATGCAGATTTTCGTCAAGACTTTGACAGGTAAGACTATTACCTTGGAAGTCGAATCCTCT 499134 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || ||||| || |||||||||||||| ||||||||||| || || Sbjct 499135 GATACCATCGACAATGTCAAATCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 499194 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || |||||| | | || | || |||||||| Sbjct 499195 CAAAGATTGATTTTCGCCGGTAAGCAATTGGAGGATGGCAGAACTCTTTCTGATTACAAT 499254 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||||| ||||| ||| |||| || |||||| Sbjct 499255 ATTCAAAAGGAATCTACCTTACACTTGGTTTTG 499287 Score = 141 bits (156), Expect = 8e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| |||||||||| || |||| | ||||| ||| || | Sbjct 499759 ATGCAGATCTTCGTCAAGACTCTAACCGGTAAGACCATCACCTTGGAAGTCGAATCCTCT 499818 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || |||||||||||||| ||||||||||| || || Sbjct 499819 GATACCATCGACAACGTTAAGTCCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 499878 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || |||||| | | || | || |||||||| Sbjct 499879 CAAAGATTGATTTTCGCCGGTAAGCAATTGGAGGATGGCAGAACTCTTTCTGATTACAAT 499938 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||||||| ||||| ||| |||| || |||||| |||| Sbjct 499939 ATTCAAAAGGAATCTACCTTACACTTGGTTTTGAGATT 499976 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| |||||||||| || |||| | ||||| ||| || | Sbjct 498847 ATGCAGATCTTCGTCAAGACTCTAACCGGTAAGACCATCACCTTGGAAGTCGAATCCTCT 498906 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | ||| || || || || ||||| ||||||||||| || || Sbjct 498907 GATACCATCGACAACGTTAAATCCAAGATCCAGGATAAGGAAGGTATTCCACCTGACCAG 498966 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || || ||||| |||||| | | || | || || |||||| Sbjct 498967 CAAAGACTGATTTTCGCTGGTAAGCAGTTGGAGGATGGCAGAACGCTTTCTGACTACAAC 499026 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || ||||| || || || ||||||| |||||| || Sbjct 499027 ATCCAAAAGGAGTCTACTTTACATTTGGTTTTGAGA 499062 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| |||||||||| || | ||| | || || || | | Sbjct 499303 ATGCAGATCTTCGTCAAGACTCTAACCGGTAAGACTATTACTTTGGAGGTTGAGTCTTCT 499362 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | ||||| || |||||||||||||| ||||||||||| || ||| Sbjct 499363 GACACGATAGACAACGTCAAATCCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAA 499422 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| || || || |||||| | | || | || || |||||| Sbjct 499423 CAAAGATTGATTTTCGCCGGTAAGCAATTGGAGGATGGCAGAACGCTTTCTGACTACAAC 499482 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||||||| || || || ||||||| |||||| || Sbjct 499483 ATTCAAAAGGAGTCTACTTTACATTTGGTTTTGAGA 499518 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || |||||||||||||| || ||||| | || || || | | Sbjct 499531 ATGCAGATTTTCGTCAAGACTTTAACCGGTAAGACCATCACTTTGGAGGTTGAGTCTTCT 499590 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | ||| || |||||||||||||| ||||| ||||| || || Sbjct 499591 GACACGATAGACAACGTTAAATCCAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAG 499650 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || ||||| |||||| | | || | || || |||||| Sbjct 499651 CAAAGACTGATTTTCGCCGGTAAGCAGTTGGAGGATGGCAGAACGCTTTCTGACTACAAC 499710 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 || ||||| || ||||| | || || |||||| || Sbjct 499711 ATCCAAAAGGAGTCCACGCTCCACTTGGTTTTGAGA 499746 >seq8 Length=1564113 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||||||||| || ||||||||||| || | || |||||||| || | Sbjct 561235 AAGATGCAAATTTTTGTTAAGACCTTAACCGGTAAGACAATTACCCTTGAAGTCGAGTCT 561176 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| || |||| || || ||||||||||||||||| ||||| || Sbjct 561175 TCTGACACTATCGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTGAC 561116 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | || ||||| || || || || || ||| | | || | || || ||| Sbjct 561115 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCTGACTAC 561056 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || || ||| | || || |||||| ||||| | || ||| Sbjct 561055 AACATCCAAAAGGAGTCTACCTTGCACTTGGTTTTGAGATTGAGAGGTGGT 561005 >seq6 Length=1504611 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 |||||| || || || || ||||| || | ||| | ||||| ||| | | || ||| | Sbjct 86081 TTTTGTGAAGACCTTGACTGGTAAGACCATTACTTTGGAAGTCGAATCTTCAGACACCAT 86140 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || |||||||||||||| |||||||| || || |||||| | | Sbjct 86141 TGACAACGTCAAGTCTAAGATTCAAGACAAGGAAGGTATTCCTCCTGACCAACAAAGATT 86200 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| || || || || || ||| | | ||| | || || |||||||||||||| Sbjct 86201 GATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAACATTCAAAA 86260 Query 22407 AGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||| | || || |||||| ||||| | || ||| Sbjct 86261 GGAATCTACCTTGCACTTGGTTTTGAGATTGAGAGGTGGT 86300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727959076520