Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 1e-15 seq6 91.5 1e-13 seq8 87.8 2e-12 >seq4 Length=1192607 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGT 138460 |||||| ||||||| | ||||||||||||||||||||||| | || | || | | Sbjct 499515 CAAAACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCAGAAAGCGTTCTGCCA-T 499457 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 |||| | ||| ||||||| | || | | |||||||| || || |||||||| |||| Sbjct 499456 CCTCCAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGT 499397 Query 138521 CGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 | ||| | || | ||| | ||| || | ||||| | ||||| ||||| | || | Sbjct 499396 C-TTGAATCTTGGATTTGACGTTG-TCTATCGTGTCAGAAGACTCAACCTCCAAAGTAAT 499339 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| || ||||| || || || |||||||| Sbjct 499338 AGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGT 138460 |||||| || || | | ||||||||||| ||||||||||| | || | || | | Sbjct 499743 CAAAACCAAGTGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTTCTGCCA-T 499685 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 |||| | || ||||||| | || || | || ||||| || || |||||||| |||| Sbjct 499684 CCTCCAACTGCTTACCGGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATACCTTCCTTGT 499625 Query 138521 CGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 | ||| | || | ||||| |||| | | ||||| | ||||| ||||| | || | Sbjct 499624 CT-TGAATCTTGGATTTAACGTTGT-CTATCGTGTCAGAAGACTCAACCTCCAAAGTGAT 499567 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| || | ||| || || ||||||||||| Sbjct 499566 GGTCTTACCGGTTAAAGTCTTGACGAAAATCTGCAT 499531 >seq6 Length=1504611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || || | | | || |||||||||||||||||||| | Sbjct 86299 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 86240 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | ||| ||||| | | |||| | | |||||||| ||||| Sbjct 86239 AAGGTTCTGCCA-TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGG 86181 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| | || | || | ||| || | |||||| | || || Sbjct 86180 AATACCTTCCTTGTC-TTGAATCTTAGACTTGACGTTG-TCAATGGTGTCTGAAGATTCG 86123 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 || || | || | || |||||||||| || || |||||| Sbjct 86122 ACTTCCAAAGTAATGGTCTTACCAGTCAAGGTCTTCACAAAA 86081 >seq8 Length=1564113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | |||||| || || | | | ||||||||||| ||||||||||| | Sbjct 561006 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 561065 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || | ||| ||||| | | |||| | | |||||||| || || Sbjct 561066 AAAGTTCTGCCA-TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 561124 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| || || | |||| || | ||||| | ||||| | Sbjct 561125 GATACCCTCCTTGTCTTGGATCTTGGACTTGACATTG-TCGATAGTGTCAGAAGACTCGA 561183 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || ||||| || | || || |||||||| ||||| Sbjct 561184 CTTCAAGGGTAATTGTCTTACCGGTTAAGGTCTTAACAAAAATTTGCAT 561232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262350373760