Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 178 1e-39 seq2 143 3e-29 >seq1 Length=762788 Score = 178 bits (196), Expect = 1e-39 Identities = 485/731 (66%), Gaps = 10/731 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||| ||||| ||||| || || || || | || || || | Sbjct 618925 TTTTGGTAGTCAGACACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTT 618984 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAA-TAG 18788 ||||||||||| ||||| || | || || | || |||||| | | || || ||| Sbjct 618985 TCCATAAAATCGAATGGGTTCGTAACGTTGAA-ATACTTTTGATTGCCAAGAGCAACTAG 619043 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || ||||||| || |||| |||||| | || ||||| || | || Sbjct 619044 CAGTCTGTCGGCAACAAATTCAACATATTGGTTCATTAGGTCGGCGTTCATACCAAGTAG 619103 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAAT-TCTTGTTCTATATTTACTGCCTCTGATATAA 18907 || ||||| ||||| | | | || |||| ||| || | || ||||| | || | Sbjct 619104 GGACACTGGTAGGGCATCGATGAAATATCTCTT-TTCGATTTCGACAGCCTCAGTAATGA 619162 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCA 18966 | |||| | | | || ||| || | ||| || ||| | | ||||||| Sbjct 619163 TTCTCTCAACAATCTTTGGATCAGGCTTGTTCTTCAAG-TGCGCAAATAGAAGACATGCA 619221 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||| || || ||||||||||| | || | |||||||| || |||| ||| ||| Sbjct 619222 AAATCAGTGTGAAGACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAGACCGGGC 619281 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||| ||| | || |||| |||||| |||| ||||| ||||| || ||||| | |||| Sbjct 619282 ATCAAACCTTTCTTCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAAAACACCT 619341 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 || || || ||||| || || | ||| ||| || | || || | | || |||||| Sbjct 619342 TCCACGGCAGCAAAGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGTCCTGGATCCAT 619401 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| || | || || | || || | ||| ||||| Sbjct 619402 CTGATGGCCCATTCGGCCTTCTCCTTGATCTGAGGAATATTTTCAATGGCATTGAATAG- 619460 Query 19207 TACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264 | || ||||| || | ||||| | || | || |||| | | ||| | || | Sbjct 619461 GAAAT-CGCTCTCCTTGGGGTCTTTGATGTAGGTGTCAATCAGCAGAGAGTAGGTCTCGG 619519 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 | || || ||||| || ||||| || |||||||| || | ||||||| || || | Sbjct 619520 AGTGGATGTTTTCCATCATGATCTGGAACCCGTAAAAGCACTTGGCTTCTGGGATTTGAA 619579 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| | || | |||||||| || || || || || || || || ||||| | Sbjct 619580 CTTCGGCTGAGAAGTTCTCGACCAAGTTCTCGTTGACAATACCGTCGGACGCAGCAAAGA 619639 Query 19385 ATGCTAATACA 19395 |||| || ||| Sbjct 619640 ATGCCAACACA 619650 >seq2 Length=1086951 Score = 143 bits (158), Expect = 3e-29 Identities = 421/644 (65%), Gaps = 6/644 (1%) Strand=Plus/Plus Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 ||||||| | || ||||||| ||| || || || || ||||| |||||| ||| | | Sbjct 390309 TGTTACAAGAATCTTTGTAAATCATGAATGGAGTACCGGTTTCCGTCTGAGCTTCTAGAA 390368 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT- 48110 | | | ||| | || ||| || ||| |||| | || || |||| Sbjct 390369 TGGCATACCATAGCTTCTGAGCTTTGATAGTCTTTCTACCACGGCCCTCTTGCACGTAAC 390428 Query 48111 -TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 || |||| | |||| |||||||| ||||| |||| | | || ||| |||| | Sbjct 390429 GTTCATATAAAGCTTCG--AATTCATCACCATAGACATCGGCAAGACCGGGAGCTTCACT 390486 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 ||| | | ||| | ||| || | | | || ||||| |||| || | |||||| | Sbjct 390487 AGGGGAAAACAAGGTCCATTCACCGTTCTCTTGAACTCTCTTCATGAACAAATCTGGAAC 390546 Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 ||| ||||| || ||||| || | | | |||||| || || || | | Sbjct 390547 CCATAGAGCAGGGAACAAATCTCTGGCACGGATTTCTTCCTTACCGTGGTTTTTCCGGAT 390606 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || | |||||| | ||||||| |||||||||||||| || ||||| | ||||||| Sbjct 390607 GTCGACAAAGTCGAAGATATCAGAGTGCCATGGTTCTAAGTAAATTGCAAAAGCACCTGG 390666 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || || || || |||||||| | || | ||||| ||||| || || | | ||| || Sbjct 390667 TCTCTTGTTGCCACCTTGATCAACGTAACGAGCAGTGTTGTTGTATACACGAACCATGGG 390726 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || ||||||||| || |||| ||||| || | ||| || || ||| | || || Sbjct 390727 GATAATACCATTCGAAGTACCGTTGGTACCTGCAATGTAGGAGCCTGTAGAACGAATGTT 390786 Query 48470 ACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528 || || ||| || ||||| || || | || || || | ||||| ||| | | Sbjct 390787 GTGGATGTGCAAT-CCGATACCGCCCGCAGTCTTGGAGATCATGGCACATTCTTTCAAAG 390845 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 |||| || || ||||| || || ||| |||| || || ||||| |||||| | Sbjct 390846 TATCGTAGATACCTTCGATGGAGTCCTCTTTCATGGCTACCAGGAAACAGGAAGACATCT 390905 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632 | |||||| ||| || | || ||||| || || ||||| ||| Sbjct 390906 GAGGATGAGGAGTACCGGCGTTGAATAACGTGGGCGATGCGTGA 390949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108743789120