Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26]
8 sequences; 10,264,457 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 178 1e-39
seq2 143 3e-29
>seq1
Length=762788
Score = 178 bits (196), Expect = 1e-39
Identities = 485/731 (66%), Gaps = 10/731 (1%)
Strand=Plus/Plus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | ||||| ||||| ||||| || || || || | || || || |
Sbjct 618925 TTTTGGTAGTCAGACACTCTCTTTTCGAAGAAGTTGGTCTTACCAGCCAAAGAAATGTTT 618984
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAA-TAG 18788
||||||||||| ||||| || | || || | || |||||| | | || || |||
Sbjct 618985 TCCATAAAATCGAATGGGTTCGTAACGTTGAA-ATACTTTTGATTGCCAAGAGCAACTAG 619043
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
||||| || || ||||||| || |||| |||||| | || ||||| || | ||
Sbjct 619044 CAGTCTGTCGGCAACAAATTCAACATATTGGTTCATTAGGTCGGCGTTCATACCAAGTAG 619103
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAAT-TCTTGTTCTATATTTACTGCCTCTGATATAA 18907
|| ||||| ||||| | | | || |||| ||| || | || ||||| | || |
Sbjct 619104 GGACACTGGTAGGGCATCGATGAAATATCTCTT-TTCGATTTCGACAGCCTCAGTAATGA 619162
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCA 18966
| |||| | | | || ||| || | ||| || ||| | | |||||||
Sbjct 619163 TTCTCTCAACAATCTTTGGATCAGGCTTGTTCTTCAAG-TGCGCAAATAGAAGACATGCA 619221
Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026
|||||| || || ||||||||||| | || | |||||||| || |||| ||| |||
Sbjct 619222 AAATCAGTGTGAAGACCCTCGTCTCTGCAAATTAGCTCATTAGAGAACGTTAGACCGGGC 619281
Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086
|||| ||| | || |||| |||||| |||| ||||| ||||| || ||||| | ||||
Sbjct 619282 ATCAAACCTTTCTTCTTTAGCCAGAAAATAGCGGCAAAGGATCCGGAGAAGAAAACACCT 619341
Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146
|| || || ||||| || || | ||| ||| || | || || | | || ||||||
Sbjct 619342 TCCACGGCAGCAAAGGCGACCAATCTCTCTGCAAATAGGGCCTCTTCGTCCTGGATCCAT 619401
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
| | ||||| || ||||||| || | || || | || || | ||| |||||
Sbjct 619402 CTGATGGCCCATTCGGCCTTCTCCTTGATCTGAGGAATATTTTCAATGGCATTGAATAG- 619460
Query 19207 TACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTG 19264
| || ||||| || | ||||| | || | || |||| | | ||| | || |
Sbjct 619461 GAAAT-CGCTCTCCTTGGGGTCTTTGATGTAGGTGTCAATCAGCAGAGAGTAGGTCTCGG 619519
Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324
| || || ||||| || ||||| || |||||||| || | ||||||| || || |
Sbjct 619520 AGTGGATGTTTTCCATCATGATCTGGAACCCGTAAAAGCACTTGGCTTCTGGGATTTGAA 619579
Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384
|||| | || | |||||||| || || || || || || || || ||||| |
Sbjct 619580 CTTCGGCTGAGAAGTTCTCGACCAAGTTCTCGTTGACAATACCGTCGGACGCAGCAAAGA 619639
Query 19385 ATGCTAATACA 19395
|||| || |||
Sbjct 619640 ATGCCAACACA 619650
>seq2
Length=1086951
Score = 143 bits (158), Expect = 3e-29
Identities = 421/644 (65%), Gaps = 6/644 (1%)
Strand=Plus/Plus
Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051
||||||| | || ||||||| ||| || || || || ||||| |||||| ||| | |
Sbjct 390309 TGTTACAAGAATCTTTGTAAATCATGAATGGAGTACCGGTTTCCGTCTGAGCTTCTAGAA 390368
Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTAT- 48110
| | | ||| | || ||| || ||| |||| | || || ||||
Sbjct 390369 TGGCATACCATAGCTTCTGAGCTTTGATAGTCTTTCTACCACGGCCCTCTTGCACGTAAC 390428
Query 48111 -TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169
|| |||| | |||| |||||||| ||||| |||| | | || ||| |||| |
Sbjct 390429 GTTCATATAAAGCTTCG--AATTCATCACCATAGACATCGGCAAGACCGGGAGCTTCACT 390486
Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229
||| | | ||| | ||| || | | | || ||||| |||| || | |||||| |
Sbjct 390487 AGGGGAAAACAAGGTCCATTCACCGTTCTCTTGAACTCTCTTCATGAACAAATCTGGAAC 390546
Query 48230 CCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289
||| ||||| || ||||| || | | | |||||| || || || | |
Sbjct 390547 CCATAGAGCAGGGAACAAATCTCTGGCACGGATTTCTTCCTTACCGTGGTTTTTCCGGAT 390606
Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349
|| | |||||| | ||||||| |||||||||||||| || ||||| | |||||||
Sbjct 390607 GTCGACAAAGTCGAAGATATCAGAGTGCCATGGTTCTAAGTAAATTGCAAAAGCACCTGG 390666
Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409
|| || || || |||||||| | || | ||||| ||||| || || | | ||| ||
Sbjct 390667 TCTCTTGTTGCCACCTTGATCAACGTAACGAGCAGTGTTGTTGTATACACGAACCATGGG 390726
Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469
|| ||||||||| || |||| ||||| || | ||| || || ||| | || ||
Sbjct 390727 GATAATACCATTCGAAGTACCGTTGGTACCTGCAATGTAGGAGCCTGTAGAACGAATGTT 390786
Query 48470 ACTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGG 48528
|| || ||| || ||||| || || | || || || | ||||| ||| | |
Sbjct 390787 GTGGATGTGCAAT-CCGATACCGCCCGCAGTCTTGGAGATCATGGCACATTCTTTCAAAG 390845
Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588
|||| || || ||||| || || ||| |||| || || ||||| |||||| |
Sbjct 390846 TATCGTAGATACCTTCGATGGAGTCCTCTTTCATGGCTACCAGGAAACAGGAAGACATCT 390905
Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGA 48632
| |||||| ||| || | || ||||| || || ||||| |||
Sbjct 390906 GAGGATGAGGAGTACCGGCGTTGAATAACGTGGGCGATGCGTGA 390949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108743789120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |