Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq7 145 2e-29 seq2 98.7 2e-15 seq5 96.9 8e-15 seq6 86.0 1e-11 >seq7 Length=1626734 Score = 145 bits (160), Expect = 2e-29 Identities = 297/436 (68%), Gaps = 9/436 (2%) Strand=Plus/Minus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAAC--TAATGGAGGACAATTGGCTTCT 110522 ||||||||| ||||||| |||| ||||||||||| | | | | | || | || Sbjct 862482 TATTCATGCCTCTCCTACGTTATTCAACGCAGGAACCGTCAATCA--ATACTTATCCTCA 862425 Query 110523 TGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAA 110582 |||||||| || ||||| || ||||| ||||| || || || | |||| | || Sbjct 862424 TGCTTTCTCCTTGGAATGTTAGAGGATTCAATTGATGGGATATACCGTACTCTACATAAA 862365 Query 110583 ACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGT-TCATGATATTCGCTC 110641 ||||| | || || ||| ||||| || |||||||||| || ||| |||| | Sbjct 862364 ACTGCGATGATATCAAAAGCTTCTGGCGGTGTTGGTATTCATGTATCA-AATATAAGGGG 862306 Query 110642 AAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAG 110701 || || || ||| || | || || |||| | ||| || ||||| ||| || | Sbjct 862305 AAGCGGTGCGTTTATTTCAGGTTCAAATGGCACTTCGAATGGTCTGGTTCCTATGCTACG 862246 Query 110702 AGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATT 110758 || |||||| |||| || || || |||||||||| |||||| || | || Sbjct 862245 TGTTTTCAACAACACAGCTCGCTACGTTGATCAAGGTGGGAATAAGAGGCCGGGTGCCTT 862186 Query 110759 TGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAA 110818 | || || || || |||||||||| || || ||||| || ||| ||||||| || || Sbjct 862185 TTGCATATACCTAGAGCCTTGGCATTGTGACATTTTTGACTTTTTACAACTTCGGAAGAA 862126 Query 110819 TCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTT 110878 || ||| |||||| |||||||| ||| | || ||||| | |||||| | || || Sbjct 862125 CCATGGAAAAGAAGAATTGAGAGCACGGGATCTTTTCTATGCTCTCTGGATTCCTGACTT 862066 Query 110879 ATTCATGAAACGTGTT 110894 ||| ||||| || ||| Sbjct 862065 ATTTATGAAGCGCGTT 862050 >seq2 Length=1086951 Score = 98.7 bits (108), Expect = 2e-15 Identities = 125/169 (74%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 305322 ATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATA 305381 ||||| ||| ||||||| | || || || ||||| ||||||||||||||||| || | Sbjct 289495 ATGATCCTGTTTTGTTCAACCGTCAGCCTTCTCTGCACAAAATGTCTATGATGGCCCACA 289436 Query 305382 AAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAAGTG-CTTGTACGCCTT 305438 ||| || ||| | || | || ||| |||| || | | ||| ||| | || | Sbjct 289435 GAGTGAAGGTAATGCCTTATTCAACTTTTAGATTGAACCTTTCAGTCACTT---CACCAT 289379 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||||| ||||| ||||| ||||||||||| ||||||| |||||||| Sbjct 289378 ATAATGCCGATTTCGATGGTGATGAAATGAACTTGCATGTTCCTCAATC 289330 >seq5 Length=1346284 Score = 96.9 bits (106), Expect = 8e-15 Identities = 172/246 (70%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 || ||||| || | | |||||||| ||||| || || || || ||| ||||| Sbjct 1116131 TCAATTCCAAATGTTCTAGATGGTTTTAAACCAGGTCAACGGAAAGTTTTATATGGTTGT 1116072 Query 279917 TTCAAAAGAAAATTGGTAAAGG--AAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAG 279974 |||||||| || ||| ||||| | ||| ||||| ||| || || ||| | || | Sbjct 1116071 TTCAAAAGGAATTTG--AAAGGTGAGATTAAAGTTGCGCAGCTAATTGGGTATATCTCGG 1116014 Query 279975 AACATGCAGGTTATCATCACGGTGAAGCGTCTCT---TCAAGGTGCTATTGTAGGTCTTG 280031 | || | ||||||||||| ||||||| |||||| |||| ||||||| || | | Sbjct 1116013 AGCACACCGGTTATCATCATGGTGAAGAGTCTCTCGCTCAA---ACTATTGTTGGAATGG 1115957 Query 280032 CCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCA--CCAAATGGTCAATTTGG 280089 | ||||| ||||| | || |||||| | || || ||| | ||||||||| ||||| Sbjct 1115956 CGCAAGACTTTATAGGATCCAACAACATTAACCT--TTTAAAGCCAAATGGTGCTTTTGG 1115899 Query 280090 TTCTCG 280095 | |||| Sbjct 1115898 TACTCG 1115893 >seq6 Length=1504611 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||||| ||||| || || || | | | || || | | ||| | | ||| Sbjct 266038 GTTCTATTCAATAGACAACCTTCTCTTCACAGATTATCAATCTTATCGCATTATGCCAAG 265979 Query 305390 GTATTATCT-GGATTGACATTTC-GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGG 305447 | | || ||| || |||| ||||||||| ||| |||||||| || ||||| | Sbjct 265978 ATTAGACCTTGGA--GAACTTTCAGATTAAATGAGTGTGTGTGTACGCCATACAATGCTG 265921 Query 305448 ATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||||| |||||||||||| ||||||| || ||| Sbjct 265920 ATTTTGATGGTGATGAAATGAATTTGCATGTTCCGCAA 265883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812678351688