Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq4 107 2e-18 >seq6 Length=1504611 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| ||||| || || ||| ||||||||||||||||| || | | Sbjct 86299 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCAGAC 86240 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| | || |||| |||||||| ||||| ||||| | || ||||| | |||| Sbjct 86239 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGGA 86180 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| ||||| ||| | |||| | | ||||| ||||| || Sbjct 86179 ATACCTTCCTTGTCTTGAATCTTAGACTTGA-CGTTGTCAATGGTGTCTGAAGATTCGAC 86121 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 |||| || || || ||||| ||||| || |||||||| Sbjct 86120 TTCCAAAGTAATGGTCTTACCAGTCAAGGTCTTCACAAA 86082 >seq4 Length=1192607 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| ||||||||||| ||| ||||||||| |||||||| || | Sbjct 499073 CCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAA 499014 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| ||||||||| || || |||| | |||||||| | ||| Sbjct 499013 AGCGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGA 498954 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| |||| || | || | |||| | | || || ||||| || Sbjct 498953 ATACCTTCCTTATCCTGGATC-TTGGATTTAACGTTGTCGATGGTATCAGAGGATTCGAC 498895 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || ||||| || | ||| || || || |||||||| Sbjct 498894 TTCCAAGGTGATGGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 498847 Score = 107 bits (118), Expect = 2e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 35502 CTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 ||| ||| ||||| | ||| ||||| ||||| ||||| ||| ||||||||||| |||| Sbjct 499993 CTTAATTACCACCTCTTAATCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGT 499934 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||| | | |||| | || |||| |||||||| || || ||||| | ||||||| Sbjct 499933 AATCAGAAAGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGT 499874 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTC 35680 | | |||| | |||||||| ||||| ||| | |||| | | || || Sbjct 499873 CAGGTGGAATACCTTCCTTGTCTTGAATCTTGGACTT-AACGTTGTCGATGGTATCAGAG 499815 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || |||| ||||| || ||||| || | ||| || || || |||||||| Sbjct 499814 GATTCGACTTCCAAGGTGATGGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499759 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || |||||| ||||| ||||| ||| ||||||||||| |||||||| | Sbjct 499301 CCACCTCTTAGCCTCAAAACCAAGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAA 499242 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| |||||||| || || ||||| | |||||||| | ||| Sbjct 499241 AGAGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGCTGGTCAGGTGGA 499182 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| ||||| || | | | | | || || ||||| || Sbjct 499181 ATACCTTCCTTGTCTTGAATCTTGGATTTGACATTGTCGATGGTATCAGAGGATTCGACT 499122 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || || ||||| |||||||| || || || |||||||| Sbjct 499121 TCCAAGGTAATAGTCTTACCTGTCAAAGTCTTGACGAAAATCTGCAT 499075 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || ||||| ||||||||||| ||| |||||||||||||||||| || | Sbjct 499529 CCACCTCTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGAATGTTGTAGTCAGAA 499470 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| |||||||| || || ||||| | || ||||| | ||| Sbjct 499469 AGCGTTCTGCCATCCTCCAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGA 499410 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| || | || |||| | | |||||| || || || Sbjct 499409 ATACCTTCCTTGT-CTTGAATCTTGGATTTGACGTTGTCTATCGTGTCAGAAGACTCAAC 499351 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 499350 CTCCAAAGTAATAGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 499303 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || |||||| |||| ||||| ||| ||||||||||| |||||||| | Sbjct 498845 CCACCTCTTAGCCTCAAAACCAGGTGTAAGGTAGATTCCTTTTGAATATTGTAATCAGAA 498786 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||| | || |||| ||||||||| || || ||||| | || || || | ||| Sbjct 498785 AGAGTTCTGCCATCCTCCAACTGCTTACCAGCGAAAATCAATCTTTGTTGATCAGGTGGA 498726 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||||| ||| |||| || | || |||| | | || || ||||| || Sbjct 498725 ATACCTTCCTTATCCTGGATC-TTGGATTTGACGTTGTCGATGGTATCAGAGGATTCAAC 498667 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||| ||||| || || || || ||||| || || || ||||||||| Sbjct 498666 CTCCAGAGTGATGGTCTTGCCGGTTAAAGTCTTGACGAAAATCTGCATT 498618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793554920640