Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 149 5e-31 seq7 100 2e-16 >seq1 Length=762788 Score = 149 bits (164), Expect = 5e-31 Identities = 278/403 (69%), Gaps = 13/403 (3%) Strand=Plus/Minus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTT 43908 || ||||| || ||||||||| |||||| || ||||| || || ||||| || | Sbjct 619649 GTGTTGGCATTCTTTGCTGCGTCCGACGGTATTGTCAACGAGAACTTGGTCGAGAACTTC 619590 Query 43909 TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 | || ||||||||| | |||||||| || ||||| ||||| || || || || Sbjct 619589 TCAGCC-GAAGTTCAAATCCCAGAAGCCAAGTGCTTTTACGGGTTCCAGATCATGATGGA 619531 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 ||| || || || || | ||| ||| ||||| || || ||||||||||| | | | Sbjct 619530 AAACATCCACTCCGAGACCTACTCTCTGCTGATTGACACCTACATCAAAGAC---CCCAA 619474 Query 44029 GAAGCATCGATTG----TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAG 44084 | || | ||||| || ||||| || |||| | ||| ||| || | || || | Sbjct 619473 GGAG-AGCGATTTCCTATTCAATGCCATTGAAAATATTCCTCAGATCAAGGAGAAGGCCG 619415 Query 44085 ACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGT 44141 | |||||| | | |||||| | | || | |||| ||| || | ||||| | Sbjct 619414 AATGGGCCATCAGATGGATCCAGGACGAAGAGGCCCTATTTGCAGAGAGATTGGTCGCCT 619355 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 |||| | |||||||| ||||||| || ||||| ||||| || || || ||| |||||| Sbjct 619354 TTGCTGCCGTGGAAGGTGTTTTCTTCTCCGGATCCTTTGCCGCTATTTTCTGGCTAAAGA 619295 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 | |||||||||||| || | ||||| || |||||| |||| Sbjct 619294 AGAAAGGTTTGATGCCCGGTCTAACGTTCTCTAATGAGCTAAT 619252 >seq7 Length=1626734 Score = 100 bits (110), Expect = 2e-16 Identities = 271/411 (66%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || |||||||| ||||| ||||| || | ||||| || || || ||||| ||| Sbjct 1317242 CCTAAGATTGTAAACGGTCCAGAAATTTTGAGCAAATACGTTGGCTCTTCAGAAGAGAAT 1317183 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAG-TTC 19547 | || | | || || || |||| |||| | || | |||| | | || ||| Sbjct 1317182 ATCCGTAATCTTTTCAAGGATGCAGAAGCAGAATACAAG-GCGAAGGGTGAAGAATCTTC 1317124 Query 19548 TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCT---GG 19604 | ||||||| || || | |||||||||||| | | | || || ||||| ||| || Sbjct 1317123 TCTGCACATCATTATCTTCGATGAATTGGACTCTGTATTCAAACAGAGAGGCTCTAGGGG 1317064 Query 19605 T---GTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGT 19661 | | || || || ||| | |||||| |||||| | || | ||| | || ||||| Sbjct 1317063 TGACGGAACCGGTGTTGGTGATAATGTTGTTAATCAATTATTGGCCAAAATGGATGGTGT 1317004 Query 19662 TAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAG 19721 | | ||||| || || |||||||| ||||| ||||| || | ||| | || ||||| Sbjct 1317003 TGATCAACTCAACAACATTTTAGTAATTGGTATGACAAACCGTAGGGATCTTATTGACAG 1316944 Query 19722 CGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATG 19781 || || | || ||||| | || || | | | || ||| | ||||| |||||| Sbjct 1316943 TGCATTGCTGCGTCCCGGAAGATTTGAGGTGCAAGTTGAGATTCAATTACCAGATGAACA 1316884 Query 19782 TGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAA 19832 || | || ||||||| | || || || | ||| || ||||||| Sbjct 1316883 AGGCAGAGTTCAAATTTTTGAGATTCAAACCAAGAAAATGAGAGAAAATAA 1316833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455961248040