Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20fermentati_20[genbank_20GCA_5F900074765.1_202016-10-26] 8 sequences; 10,264,457 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4 111 4e-19 seq8 104 5e-17 >seq4 Length=1192607 Score = 111 bits (122), Expect = 4e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| || | | ||||| ||||| || | Sbjct 499737 CAAG-TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTTCTGCCATCCTCCA 499679 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| || || || |||||||| | | ||| |||||||| ||||||| Sbjct 499678 ACTGCTTACCGGCGAAAATCAGTCTTTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGAA 499619 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| || | |||| |||| ||| ||| || || | ||| || || || | Sbjct 499618 TCTTGGATTTAACGTTGTCTATCGTGTCAGAAGACTCAACCTCCAAAGTGATGGTCTTAC 499559 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 | || | |||||| ||||| | |||||| ||| |||| ||| Sbjct 499558 CGGTTAAAGTCTTGACGAAAATCTGCATACCACCTCTTAGTCT 499516 Score = 96.9 bits (106), Expect = 8e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| | ||||||||| |||||||||||||| || | | ||| Sbjct 499067 CTTAGTCTCAAAACCAAATGTAAAGTAGACTCCTTTTGGATGTTGTAGTCAGAAAGCGTT 499008 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || | || || ||||| || || || |||||||| | | || ||| Sbjct 499007 CTGCCATCCTCCAACTGCTTACCAGCGAAAATCAGTCTTTGCTGGTCAGGTGGAATACCT 498948 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||| || | || | | | || || || ||||| | Sbjct 498947 TCCTTATCCTGGATCTTGGATTTAACGTTGTCGATGGTATCAGAGGATTCGACTTCCAAG 498888 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||| ||||||| |||||| Sbjct 498887 GTGATGGTCTTACCGGTTAGAGTCTTGACGAAGATCTGCAT 498847 >seq8 Length=1564113 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 |||||||| |||||||||||||| || | |||||||| |||||||| | || || Sbjct 561036 GTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCTTCCAATTGCTTACCA 561095 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | || || ||||| | | ||| || ||||| ||||| || || ||| Sbjct 561096 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTTGTCTTGGATCTTGGACTTG 561155 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| ||| ||| |||||||| ||||| || || || || | ||| Sbjct 561156 ACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGGGTAATTGTCTTACCGGTTAAGGTC 561215 Query 152088 TTCACGAAGACCTGCATTTT 152107 || || || | ||||| || Sbjct 561216 TTAACAAAAATTTGCATCTT 561235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820681733368