Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20lanzarotensis_20[genbank_20GCA_5F000938715.1_202015-01- 21] 24 sequences; 11,092,131 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq3 95.1 9e-15 >seq1 Length=1828985 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||||| ||| | |||||| |||| ||| |||||||| | ||||| || ||| Sbjct 1304808 CCACCACGCAATCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGAC 1304749 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || ||||||||||| || ||||||||||||| || || || | || Sbjct 1304748 AAAGTTCTGCCATCTTCCAATTGTTTTCCCGCAAAAATCAATCTTTGCTGGTCTGGTGGA 1304689 Query 43003 ACACCTTCTTTTTCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||| || || || ||| ||| ||| || || || ||| ||||| || ||| | Sbjct 1304688 ATACCCTCCTTATC-CTGAATCTTGCTC-TTCACGTTGTCAATAGTGTCAGAAGACTCCA 1304631 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| | |||||||||||||| ||||| Sbjct 1304630 CTTCCAGAGTAATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 1304582 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||||||| | |||||| |||| ||| |||||||| | |||||| || ||| Sbjct 1304580 CCACCGCGCAGTCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAGTCAGAC 1304521 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || ||||||||||| || ||||||||||||| || || || | || Sbjct 1304520 AAAGTTCTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGTGGA 1304461 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || ||| ||| || || || ||| ||||| || || || Sbjct 1304460 ATACCTTCCTTGTCTTGAATCTTGCTC-TTCACGTTGTCAATAGTGTCCGAAGATTCCAC 1304402 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || ||||| || | ||| || |||||||| |||||||| Sbjct 1304401 TTCCAGAGTAATGGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATTTT 1304351 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| | |||||| |||| ||| |||||||| | |||||| || ||| Sbjct 1305036 CCGCCCCGTAGTCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGTATATTGTAGTCAGAC 1304977 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || ||||||||||| || ||||||||||||| || || || | || Sbjct 1304976 AAAGTTCTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGTGGA 1304917 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || ||| ||| || || || ||| ||||| || || || Sbjct 1304916 ATACCCTCCTTGTCTTGAATCTTGCTC-TTCACGTTGTCAATAGTGTCAGAAGATTCCAC 1304858 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || |||||||| | |||||||| ||||| ||||| Sbjct 1304857 CTCTAGAGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAAATCTGCAT 1304810 >seq3 Length=955168 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||||| |||||| || | ||| ||||| || | ||||| || ||| Sbjct 273711 CCACCTCTCAATCTTAGCACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCCGAC 273770 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | |||| ||||| || || || ||||| ||||||| |||||| || | || Sbjct 273771 AAAGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGGTCAGGAGGA 273830 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| || ||||| || | | ||||| || ||| || Sbjct 273831 ATACCTTCCTTGTC-CTGAATCTTGGACTTGACATTGTCGATGGTGTCAGAAGACTCCAC 273889 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || |||||||| || || || ||||||||||| || Sbjct 273890 CTCAAGGGTGATCGTCTTACCGGTTAGGGTCTTGACGAAAATTTGCATCTT 273940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369488449392