Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20lanzarotensis_20[genbank_20GCA_5F000938715.1_202015-01- 21] 24 sequences; 11,092,131 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 seq1 104 2e-17 >seq5 Length=910667 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 8350 AAGCCCGTTCCCTTCGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 8409 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 8410 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 8444 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 16925 AAGCCCGTTCCCTTCGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 16984 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 16985 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 17019 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 10333 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 10392 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 10393 GCCAATATTTAGCTTTA 10409 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| | Sbjct 18908 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 18967 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 18968 GCCAATATTTAGCTTTA 18984 >seq1 Length=1828985 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || ||||| |||||||| |||||||| ||||||||| | | || || Sbjct 1305019 CACCAAGTGGAGAGTCGATTCCTTTTGTATATTGTAGTCAGACAAAGTTCTGCCATCTTC 1304960 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||||||||||| ||||| || | | ||| || || | || | || || ||||| Sbjct 1304959 CAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGTGGAATACCCTCCTTGTCTTG 1304900 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || |||||| || | | ||| || | ||| || |||| || || || || Sbjct 1304899 AATCTTGCTCTTCACGTTGTCAATAGTGTCAGAAGATTCCACCTCTAGAGTGATGGTCTT 1304840 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||||||||||||||| |||||||| Sbjct 1304839 TCCGGTCAAGGTTTTCACGAAAATCTGCAT 1304810 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| | | |||||| || ||||| |||||||| || ||||| |||| Sbjct 1304810 TACCACCACGCAATCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAG 1304751 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || ||||||||||| ||||| || | | ||| || || | | Sbjct 1304750 ACAAAGTTCTGCCATCTTCCAATTGTTTTCCCGCAAAAATCAATCTTTGCTGGTCTGGTG 1304691 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | || || || ||| ||| || |||||| || | | ||| || | || | Sbjct 1304690 GAATACCCTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCAGAAGACTCCA 1304631 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| || || || |||||||||||||| || |||||||| Sbjct 1304630 CTTCCAGAGTAATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 1304582 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || | | |||||| || ||||| |||||||| |||||||| |||| Sbjct 1304582 TACCACCGCGCAGTCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAGTCAG 1304523 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | || || ||||||||||| ||||| || | | ||| || || | | Sbjct 1304522 ACAAAGTTCTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGTG 1304463 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| || |||||| || | | ||| || | ||| | Sbjct 1304462 GAATACCTTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCCGAAGATTCCA 1304403 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| | ||||| || || || ||||| || || || || |||||||| ||| Sbjct 1304402 CTTCCAGAGTAATGGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATTTTT 1304350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947102027944