Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20lanzarotensis_20[genbank_20GCA_5F000938715.1_202015-01- 21] 24 sequences; 11,092,131 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq3 123 2e-23 >seq1 Length=1828985 Score = 147 bits (162), Expect = 2e-30 Identities = 175/237 (74%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24980 ATTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCAC 25039 ||||| |||| |||| |||||| || ||||||||||||||||| || || |||| || Sbjct 1304338 ATTTGAACAA---GGAAAAATGCAGATTTTTGTAAAGACTTTGACTGGAAAGACCATTAC 1304394 Query 25040 AGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGA 25099 | |||||||| || || |||||||| || ||||| || || ||||| || Sbjct 1304395 TCTGGAAGTGGAATCTTCGGACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGA 1304454 Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||| ||||| || | | |||||||| || |||||||| ||||||| | Sbjct 1304455 AGGTATTCCACCAGACCAGCAAAGATTGATTTTTGCAGGAAAACAATTGGAAGATGGCAG 1304514 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||| || || |||||||| ||||| ||||| || || || || ||||| || || Sbjct 1304515 AACTTTGTCTGACTACAATATCCAAAAGGAATCGACTCTCCACTTGGTGCTCAGACT 1304571 Score = 127 bits (140), Expect = 2e-24 Identities = 175/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||||||| || ||||||| | || ||||| || ||| Sbjct 1304810 ATGCAGATTTTCGTGAAAACCTTGACCGGAAAGACCATCACTCTAGAGGTGGAATCTTCT 1304869 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || || ||||| || || |||||||| ||||| Sbjct 1304870 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCACCAGACCAG 1304929 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || |||||||| ||||||| | ||| || || |||||| Sbjct 1304930 CAAAGATTGATTTTTGCAGGAAAACAATTGGAAGATGGCAGAACTTTGTCTGACTACAAT 1304989 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT--ATTATA 25236 || ||||| ||||| || || || || ||||| || ||| | || || | || | ||| Sbjct 1304990 ATACAAAAGGAATCGACTCTCCACTTGGTGCTCAGACTACGGGGCGGTATTTGAGTAATA 1305049 Query 25237 CTAT 25240 |||| Sbjct 1305050 CTAT 1305053 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || |||||||| || |||| || | ||||||||||| ||| Sbjct 1304582 ATGCAGATTTTTGTGAAAACCTTGACCGGAAAGACCATTACTCTGGAAGTGGAGTCTTCT 1304641 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || ||||| || || || || || || |||||||| ||||| Sbjct 1304642 GACACTATTGACAACGTGAAGAGCAAGATTCAGGATAAGGAGGGTATTCCACCAGACCAG 1304701 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | |||||||| || |||||||| ||||||| | ||| || || ||||| Sbjct 1304702 CAAAGATTGATTTTTGCGGGAAAACAATTGGAAGATGGCAGAACTTTGTCTGACTACAAC 1304761 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 || ||||| ||||| || || || || ||||| || Sbjct 1304762 ATCCAAAAGGAATCGACTCTCCACTTGGTGCTCAG 1304796 >seq3 Length=955168 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | |||||||| | ||||| | || |||||||| ||| Sbjct 273937 ATGCAAATTTTCGTCAAGACCCTAACCGGTAAGACGATCACCCTTGAGGTGGAGTCTTCT 273878 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| ||||| |||||| Sbjct 273877 GACACCATCGA--CAATGTCAAGTCCAAGATTCAG-GACAAGGAAGGTATTCCTCCTGAC 273821 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || ||||| || || || || ||||| | | ||| || || ||| Sbjct 273820 CAACAGAGATTGATCTTTGCTGGTAAGCAGTTGGAAGACGGCAGAACTTTGTCGGACTAC 273761 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || |||||||| | || || |||||||| | ||||| || Sbjct 273760 AACATCCAGAAGGAATCCACCTTGCACTTGGTGCTAAGATTGAGAGGTGG 273711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327873251560