Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20lanzarotensis_20[genbank_20GCA_5F000938715.1_202015-01- 21] 24 sequences; 11,092,131 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 159 6e-34 seq1 132 9e-26 seq3 107 3e-18 seq9 100 5e-16 >seq6 Length=784318 Score = 159 bits (176), Expect = 6e-34 Identities = 364/543 (67%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| || |||||| ||||||||||||| || || || || ||| || || Sbjct 310618 TTTTGGTAATCCGAAACTCTTTTTTCGAAAAAATTGGTCTTACCAGCTAGCGAAATGTTT 310677 Query 38892 TTCATAAAATCAAATGGATTTTTGGTA--TTATAATATTTTTCTCCTATCAATACATATA 38949 | ||| |||||||| ||||| | || |||||| | || || ||| | | Sbjct 310678 TCCATGAAATCAAAAGGATTG--GATACCTTATAAAACTTGTCATTACCCAAAGCCACCA 310735 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | |||||||| || |||||||| |||||||| ||| || || ||||| |||| | Sbjct 310736 ACAATCTATCAGCAACAAATTCCACATATTGATTCATCAAATCGGCGTTCATGCCCAGCA 310795 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || | || | ||||| || | | | || ||||| || || | | |||| | Sbjct 310796 ATGATACGGGCAGGGCATCTCTAAAATAACGCTGCTCAATTTCAACCGCCTCTGTAATGA 310855 Query 39070 tcataattatattattttttgataat--ttatatttaatatgattcgcatataGTAAACA 39127 | | || | |||||| ||| |||| ||| | || ||| | || ||||| Sbjct 310856 TTCT--TTCAACGATTTTTGGATTTGGCTTATTTTTCAAGTGT---GCAAACAGCAAACA 310910 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||||||||||||||||||||| || || | || | ||||| ||| || || || Sbjct 310911 CGCAAAATCCGTATGTAAACCTTCATCTCTGCAAATGAGCTCATTGGAAAATGTCAAACC 310970 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| || ||| ||||||| ||||| || || | ||||||| || || || || | Sbjct 310971 CGGCATCAAACCTTTCTTTTTGAGCCAGAAAATGGCTGCAAAAGAACCTGAGAAAAAAAC 311030 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 ||| || ||| ||||| || | | |||| | || || | | || || ||| ||| Sbjct 311031 ACCTTCAACAGCTGCAAAAGCCACCAATCTTTCACCGAAAAGTGCTTCTTCGTCTTGAAT 311090 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| |||||||||| | || |||| |||||| || ||| |||| || || || || Sbjct 311091 CCACCTTATGGCCCATTGAGCCTTTTCTTTGATTTGCGGGATAGTTTCGATTGCATTGAA 311150 Query 39368 TAA 39370 || Sbjct 311151 CAA 311153 >seq1 Length=1828985 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||| | || || || | ||| | || || ||||| || || Sbjct 1304583 ATACCACCGCGCAGTCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAGTCA 1304524 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || ||||||||||| || |||||||| ||||| || ||||| ||| Sbjct 1304523 GACAAAGTTCTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGT 1304464 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || || || ||||| || || ||||| Sbjct 1304463 GGAATACCTTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCCGAAGATTCC 1304404 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||||||| || ||||| || || || | || ||||||||||| Sbjct 1304403 ACTTCCAGAGTAATGGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATTTT 1304351 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || |||| || | || ||||||||||| || |||||||| ||||| Sbjct 1304991 ATATTGTAGTCAGACAAAGTTCTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTT 1304932 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || || ||||| || || | || || || ||||| Sbjct 1304931 TGCTGGTCTGGTGGAATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTG 1304872 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| || |||||||| ||||| || || || || ||||| | ||| |||||| Sbjct 1304871 TCAGAAGATTCCACCTCTAGAGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAAATCTGC 1304812 Query 172068 AT 172069 || Sbjct 1304811 AT 1304810 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || || || || |||| || | || ||||||||||| || |||||||| ||||| Sbjct 1304763 ATGTTGTAGTCAGACAAAGTTCTGCCATCTTCCAATTGTTTTCCCGCAAAAATCAATCTT 1304704 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || ||||| || || || | || || || ||||| Sbjct 1304703 TGCTGGTCTGGTGGAATACCCTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTG 1304644 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || ||||| ||||||||||| || || || || ||||| | || |||||| Sbjct 1304643 TCAGAAGACTCCACTTCCAGAGTAATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGC 1304584 Query 172068 AT 172069 || Sbjct 1304583 AT 1304582 >seq3 Length=955168 Score = 107 bits (118), Expect = 3e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || || || | || || || || Sbjct 273702 TTCTTACCACCACCTCTCAATCTTAGCACCAAGTGCAAGGTGGATTCCTTCTGGATGTTG 273761 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || |||| ||||| || ||||||||||| || |||||||||||| Sbjct 273762 TAGTCCGACAAAGTTCTGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGG 273821 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 ||||| || || ||||| || || || || || || ||||| || || || || Sbjct 273822 TCAGGAGGAATACCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGAA 273881 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || || || || || ||||| |||| || || | ||| || ||||| || Sbjct 273882 GACTCCACCTCAAGGGTGATCGTCTTACCGGTTAGGGTCTTGACGAAAATTTGCATCTT 273940 >seq9 Length=718525 Score = 100 bits (110), Expect = 5e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || || || ||||| | || || || || || Sbjct 427257 ATGATACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAG 427316 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| || | || |||||||| || || |||||||| |||||| Sbjct 427317 TCGGACAAGGTTCTGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCA 427376 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || || || || ||||| || || || ||||| || || || || ||| Sbjct 427377 GGAGGAATACCCTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCCGAAGAT 427436 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| | ||| ||||| |||||||| || || || Sbjct 427437 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAGGTCTT 427474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135728459200