Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20lanzarotensis_20[genbank_20GCA_5F000938715.1_202015-01- 21] 24 sequences; 11,092,131 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3 152 1e-31 seq1 147 5e-30 seq9 131 4e-25 seq10 87.8 4e-12 >seq3 Length=955168 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | ||| | ||||| || || |||||||| || |||| | || || || Sbjct 273722 TCTTAGCACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCCGACAAAGTTCTGCC 273781 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| |||||| || || ||||| | | |||||||||||||||| |||||||| Sbjct 273782 GTCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGTTGGTCAGGAGGAATACCTTCCTT 273841 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||| ||||| || || || |||||||||||||| || ||||| || ||||| Sbjct 273842 GTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 273901 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||| || || || ||||| || || | ||||| || Sbjct 273902 CGTCTTACCGGTTAGGGTCTTGACGAAAATTTGCATCTT 273940 >seq1 Length=1828985 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| || || | ||| ||||| || || |||||||| || || || | | || Sbjct 1304574 CGCAGTCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATATTGTAGTCAGACAAAGTT 1304515 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||||| || || ||||| || || | | ||| ||||| || |||| ||| Sbjct 1304514 CTGCCATCTTCCAATTGTTTTCCTGCAAAAATCAATCTTTGCTGGTCTGGTGGAATACCT 1304455 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| |||||||| || || ||||| || ||| || || ||| Sbjct 1304454 TCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCCGAAGATTCCACTTCCAGA 1304395 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || |||||||| || | |||||||||||| | ||||||||| Sbjct 1304394 GTAATGGTCTTTCCAGTCAAAGTCTTTACAAAAATCTGCATTTT 1304351 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| || || | ||| ||||| || || ||||||||||| || || | | || Sbjct 1304803 ACGCAATCTGAGCACCAAGTGGAGAGTCGATTCCTTTTGGATGTTGTAGTCAGACAAAGT 1304744 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || |||||||||| || || || || || || | | ||| ||||| || |||| || Sbjct 1304743 TCTGCCATCTTCCAATTGTTTTCCCGCAAAAATCAATCTTTGCTGGTCTGGTGGAATACC 1304684 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||| ||||| |||||||| || || |||||||| || || || || Sbjct 1304683 CTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCAGAAGACTCCACTTCCAG 1304624 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || |||||||| || | || || ||||| | |||||| Sbjct 1304623 AGTAATGGTCTTTCCGGTCAAGGTTTTCACAAAAATCTGCAT 1304582 >seq9 Length=718525 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | |||||| || || |||||||| || || | | ||| || || Sbjct 427274 TCTCAAGACCAAGTGCAAAGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTTCTGCC 427333 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| |||||||| || |||||||| | | || ||||||||||||| || ||||| Sbjct 427334 GTCTTCAAGCTGCTTACCAGCGAAGATCAATCTCTGCTGGTCAGGAGGAATACCCTCCTT 427393 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || || || || |||||||| || |||||| || | |||||| Sbjct 427394 GTCTTGAATCTTGGACTTGACATTGTCAATGGTGTCCGAAGATTCAACTTCCAAAGTGAT 427453 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | ||||| ||||| Sbjct 427454 GGTCTTACCAGTCAAGGTCTTGACAAA 427480 >seq10 Length=558261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869 |||||||| ||||||||||| || ||||| || || ||||||| | | || |||| Sbjct 498488 CCAAAGAAACACGGAAGAGGTGGTCAATCCGCGCTTCGTTTTGCCCGTTTAAGAGAGGAG 498547 Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGAC 139929 || || ||||||||| | ||||| || |||||| ||| | ||| ||||||| || Sbjct 498548 AAAAGACACAACTACGTCAGAAAGGTAGCAGAGGTGGCAGTCCAGAACTTTATCACCAAC 498607 Query 139930 AACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 | ||| ||| ||| | ||||||| ||||| || || |||||||| Sbjct 498608 GATAAGCCCAATGTCAAGGGTTTGATTTTGGCTGGTTCTGCCGATTTCAAGAC 498660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151643560760