Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20mirantina_20[genbank_20GCA_5F900074745.1_202016-10-25] 8 sequences; 10,117,267 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8 109 5e-19 seq6 100 2e-16 >seq8 Length=1778692 Score = 109 bits (120), Expect = 5e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 44804 AAGGCCGAATGGGCGATGAAGTATATT---GACGATGAAAAGATAACTTTGGCCGAACGA 44860 ||||||||||||||||| | | ||| ||||| ||| | | || || ||||| Sbjct 705466 AAGGCCGAATGGGCGATCAGATGGATTCAGGACGACGAAGCGTTG---TTCGCGGAACGG 705522 Query 44861 TTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTT 44920 | || || |||||| ||||||||| ||||| || || || |||||||| || || Sbjct 705523 CTCGTAGCGTTCGCCGCTGTCGAAGGTGTGTTTTTCTCAGGTTCGTTTGCGGCCATTTTC 705582 Query 44921 TACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGA 44980 | |||||| ||||| | ||||||||||| ||||| ||||| | |||| ||| Sbjct 705583 TGGTTGAAAAAGAAGGGTCTTATGCCCGGACTCACGTTCTCGAACGAGCTTATTTGCAGA 705642 Query 44981 GACGAAGGTCTGCACACCAACTTTGCCTGC 45010 ||||||||| ||||||| |||| || ||| Sbjct 705643 GACGAAGGTTTGCACACAGACTTCGCGTGC 705672 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 |||||||| |||||||| | || || || |||||||||||||| ||| || ||| | Sbjct 1641511 AATCTCAAGACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAGTCGGACAAAGTTCTT 1641452 Query 118581 GTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 ||| || | || || |||||| |||| | | ||||| || || || || || ||| Sbjct 1641451 CCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGGATACCTTCC 1641392 Query 118641 TTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTC 118700 ||||| || || || || | |||| |||||| | || ||||| | ||| Sbjct 1641391 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCAGAAGATTCAACCTCTAAGGTG 1641332 Query 118701 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || || || || |||||||||||||| Sbjct 1641331 ATAGTCTTACCCGTAAGGGTCTTGACAAAAATCTGCAT 1641294 >seq6 Length=1501435 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | || || |||||||||||||||||||| || || | ||| Sbjct 435052 CAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCCGACAAGGTTCTACCATC 435111 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| |||||| | || | | || || || ||||| || ||||| ||||| Sbjct 435112 TTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGGATACCCTCTTTGTC 435171 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | |||| |||||| | | || ||||||| || | ||| Sbjct 435172 CTGAATCTTGGACTTCACATTATCGATGGTGTCAGAGGATTCAACCTCGAGAGTAATCGT 435231 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| |||||||||||||| Sbjct 435232 CTTTCCCGTAAGGGTTTTGACAAAAATCTGCAT 435264 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| | || | ||| || ||||| | || || |||||||||||||||||||| Sbjct 434040 ACCTCCTCTCAAACGCAAGACTAAGTGCAGAGTTGATTCTTTTTGAATGTTGTAATCCGA 434099 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || | ||| || | |||||| |||||| | || | | || || || ||||| Sbjct 434100 CAAGGTTCTACCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAGG 434159 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||| ||||| ||| || || || | |||| ||||| | || || Sbjct 434160 GATACCCTCTTTGTCCTGAATCTTGGACTTCACATTATCGATAGTGTCGGAAGATTCAAC 434219 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||| || || || || || || || ||||||||||| Sbjct 434220 CTCGAGAGTAATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCAT 434267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | || | ||| || ||||| | || || |||||||||||||||||||| Sbjct 434808 TACCACCTCTCAAACGCAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCCG 434867 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | ||| || | |||||| |||||| | || | | || || || |||| Sbjct 434868 ACAAGGTTCTACCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAG 434927 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| ||||| ||| || || || | |||| ||||| | || | Sbjct 434928 GGATACCCTCTTTGTCCTGAATCTTGGACTTCACATTATCGATAGTGTCGGAAGATTCAA 434987 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || | ||| || || || || || || || ||||||||||| Sbjct 434988 CCTCGAGAGTAATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCAT 435036 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || ||||| | || || |||||||||||||||||||| || || | ||| Sbjct 434283 CAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCAGACAATGTTCTACCATC 434342 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || ||||| |||| || | ||||||||| ||||| || ||||||||||| Sbjct 434343 TTCTAACTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGGATACCCTCCTTGTC 434402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830357701536