Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20mirantina_20[genbank_20GCA_5F900074745.1_202016-10-25] 8 sequences; 10,117,267 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 seq8 87.8 1e-12 >seq6 Length=1501435 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||| || | || |||| ||| |||||| || || ||||| Sbjct 434299 GTTGATTCTTTTTGAATGTTGTAATCAGACAATGTTCTACCATCTTCTAACTGCTTGCCA 434358 Query 18189 GCATAGATAAGTCTTTGTTGATCC 18212 ||| ||||||| || || |||||| Sbjct 434359 GCAAAGATAAGCCTCTGCTGATCC 434382 Score = 86.0 bits (94), Expect = 5e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 ||| || ||||||||||||||||||||||| || | || ||| ||| ||||||||| || Sbjct 434064 GTGCAGAGTTGATTCTTTTTGAATGTTGTAATCCGACAAGGTTCTACCATCTTCCAACTG 434123 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||||| || | || | ||||||||| || Sbjct 434124 TTTGCCAGCGAAAATCAATCTTTGTTGGTC 434153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||| || | || ||| ||| ||||||||| |||||||| Sbjct 434840 GTTGATTCTTTTTGAATGTTGTAATCCGACAAGGTTCTACCATCTTCCAACTGTTTGCCA 434899 Query 18189 GCATAGATAAGTCTTTGTTGATC 18211 || | || | ||||||||| || Sbjct 434900 GCGAAAATCAATCTTTGTTGGTC 434922 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||||||||| || | || ||| ||| ||||||||| |||||||| Sbjct 435068 GTTGATTCTTTTTGAATGTTGTAATCCGACAAGGTTCTACCATCTTCCAACTGTTTGCCA 435127 Query 18189 GCATAGATAAGTCTTTGTTGATC 18211 || | || | ||||||||| || Sbjct 435128 GCGAAAATCAATCTTTGTTGGTC 435150 >seq8 Length=1778692 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || || || ||||| ||||||||||| | || ||| | | ||||||| Sbjct 71405 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCTTCC 71346 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 71345 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCCTGG 71286 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||| | ||| ||| | |||||| | || Sbjct 71285 ATCTTCGACTTGACATTGTCAATGGTGTCGGAAGATTCGACTTCCAAAGTGATGGTCTTA 71226 Query 18297 CCGGTCAATGTTTTTACAAAA 18317 || ||||| || || |||||| Sbjct 71225 CCAGTCAAGGTCTTGACAAAA 71205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||||||||||||||||| || ||| | | ||||||| Sbjct 1641502 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAGTCGGACAAAGTTCTTCCATCTTCC 1641443 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || |||| | |||||| || || || | |||||||| || Sbjct 1641442 AATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGGATACCTTCCTTGTC 1641387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343963013960