Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20mirantina_20[genbank_20GCA_5F900074745.1_202016-10-25] 8 sequences; 10,117,267 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq6 96.9 4e-15 >seq8 Length=1778692 Score = 114 bits (126), Expect = 1e-20 Identities = 293/439 (67%), Gaps = 19/439 (4%) Strand=Plus/Plus Query 50407 TTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTT 50466 || || ||||| | || ||||| ||| || |||||||||||||| || ||| ||| Sbjct 705511 TTCGCGGAACGGCTCGTAGCGTTCGCCGCTGTCGAAGGTGTGTTTTTCTCAGGTTCGTTT 705570 Query 50467 GCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAG 50526 || ||||| || | | |||| || | |||||||| |||||||| |||||| Sbjct 705571 GCGGCCATTTTCTGGTTGAAAAAGAAGGGTCTTATGCCCGGACTCACGTTCTCGAACGAG 705630 Query 50527 TTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCGTGTTTGTACTACAATACGCGC 50586 | |||| | |||||||| ||||||||||||| ||||| |||| | || Sbjct 705631 CTTATTTGCAGAGACGAAGGTTTGCACACAGACTTCGCGTGCTTGT-------TGTTTGC 705683 Query 50587 GTAAATGAAAAATTA-TCATA-CGAAACAATTTTGGAC--ATGTTCAAAGAAGCCGTCGA 50642 | | ||||||| | || | | || | | | || || ||| || || ||||| Sbjct 705684 GCACTTGAAAAACAAGCCAGATCCCAAGATCGTCGAACGAATCATCACGGAGGCTGTCGA 705743 Query 50643 CATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGA 50702 ||||||||| | |||| ||||| | || || | || | || ||||||||||| Sbjct 705744 GATCGAAAAAAGATACTTCATCGACGCGCTGCCGGTCTCGTTACTCGGTATGAACGCAGA 705803 Query 50703 CATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACC 50762 | | ||| | |||| | || ||||| || ||||||||| | || ||| ||| | || Sbjct 705804 CCTCATGAACCAGTATGTGGAATTTGTCGCTGACAGATTGCTCGTGGCGCTCGGA-AGCC 705862 Query 50763 GAAATACTATAATGCACGTAACC---CCTTTC-CGTTTATGAATAACATATCGTTGGAGG 50818 ||| | | | |||| ||| |||||| |||||| | ||||| || | | | Sbjct 705863 AAAAGGTTTTCA---ACGTGACCAATCCTTTCGACTTTATGGAAAACATCTCTCTTGCCG 705919 Query 50819 GCAAAACAAACTTTTTCGA 50837 |||| || ||||||||||| Sbjct 705920 GCAAGACCAACTTTTTCGA 705938 >seq6 Length=1501435 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| |||||||| ||||| || | || ||||||||||| ||||||||||| | Sbjct 434041 CCTCCTCTCAAACGCAAGACTAAGTGCAGAGTTGATTCTTTTTGAATGTTGTAATCCGAC 434100 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||| ||||| | |||| | ||| || || ||||| Sbjct 434101 AAGGTTCTACCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGG 434160 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | | ||| || Sbjct 434161 ATACCCTCTTTGTCCTGAATCTTGGACTTCACATTATCGATAGTGTCGGAAGATTCAACC 434220 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || || | || || ||||| || |||||| Sbjct 434221 TCGAGAGTAATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCATA 434268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||||| ||||| || | || ||||||||||| ||||||||||| | Sbjct 434810 CCACCTCTCAAACGCAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 434869 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||| ||||| | |||| | ||| || || ||||| Sbjct 434870 AAGGTTCTACCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGG 434929 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | | ||| || Sbjct 434930 ATACCCTCTTTGTCCTGAATCTTGGACTTCACATTATCGATAGTGTCGGAAGATTCAACC 434989 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||| || || | || || ||||| || |||||| Sbjct 434990 TCGAGAGTAATCGTCTTTCCCGTGAGGGTCTTGACGAAAATCTGCATA 435037 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | |||||| ||||| || | || ||||||||||| ||||||||||| | Sbjct 435038 CCACCTCTCAGACGCAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCCGAC 435097 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||| ||||| | |||| | ||| || || ||||| Sbjct 435098 AAGGTTCTACCATCTTCCAACTGTTTGCCAGCGAAAATCAATCTTTGTTGGTCTGGAGGG 435157 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || || | | || | ||||| | || ||| || Sbjct 435158 ATACCCTCTTTGTCCTGAATCTTGGACTTCACATTATCGATGGTGTCAGAGGATTCAACC 435217 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || || | ||||| || || || ||||| Sbjct 435218 TCGAGAGTAATCGTCTTTCCCGTAAGGGTTTTGACAAAAATCTGCAT 435264 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | |||||| ||||| || | || ||||||||||| ||||||||||| | Sbjct 434269 CCACCTCTCAGACGCAAGACTAAGTGCAAAGTTGATTCTTTTTGAATGTTGTAATCAGAC 434328 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || |||||| |||| || | |||||||| ||||| Sbjct 434329 AATGTTCTACCATCTTCTAACTGCTTGCCAGCAAAGATAAGCCTCTGCTGATCCGGAGGG 434388 Query 143078 ATGCCTTCTTTGTC 143091 || || || ||||| Sbjct 434389 ATACCCTCCTTGTC 434402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014349298560