Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lachancea_20mirantina_20[genbank_20GCA_5F900074745.1_202016-10-25] 8 sequences; 10,117,267 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8 208 6e-48 seq4 127 2e-23 seq6 104 2e-16 >seq8 Length=1778692 Score = 208 bits (230), Expect = 6e-48 Identities = 569/859 (66%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 551745 CTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTT 551804 || || ||| ||||||| ||| | || || ||||| ||| || ||||| | Sbjct 1126529 CTACTGTCTATCGAAGACGGTATTTTCGAAGTCAAGGCTACCGCTGGTGACACTCATTTG 1126470 Query 551805 GGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAA 551862 ||||| |||||||| || || ||| |||| | || | || |||| || || ||| Sbjct 1126469 GGTGGTGAAGATTTCGACAACAGATTGGTCAACCAC--TTCGTCCAAGAATTCAAGAGAA 1126412 Query 551863 AAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTC--GTCTAAGAACTGCTTG 551920 | ||||| || | | || | |||||| |||| | | | |||||||| || Sbjct 1126411 AGAACAAGAAGGACTTGACCAC--CAACCAAAGATCTTTGAGAAGATTGAGAACTGCATG 1126354 Query 551921 CGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATT 551980 || |||||||| || || | || ||| | |||||||| | ||||| | || || || Sbjct 1126353 TGAGAGAGCCAAGAGAACTTTGTCCTCTTCTGCTCAAACCTCCATTGAGATCGACTCTTT 1126294 Query 551981 ATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTC 552040 || || || || || | | || |||| | || |||| ||||||||| | ||| | Sbjct 1126293 GTTCGAAGGTATCGACCTTTACACCTCTATCACCAGAGCCAGATTTGAAGAATTGTGTGC 1126234 Query 552041 TGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGA 552100 ||| | || ||| || | || || || || | || || ||||| | || | || Sbjct 1126233 TGACTTGTTCAGATCCACTTTGGACCCTGTTGAGAAGGTCTTGAGAGACGCTAAATTGGA 1126174 Query 552101 TAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCG 552160 || || || || ||||| || ||||||||||| ||||| |||||||| || ||| Sbjct 1126173 CAAGTCTGCCGTTCACGAAATCGTTCTTGTTGGTGGTTCTACCAGAATTCCAAAGGTTC- 1126115 Query 552161 CGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGA 552217 ||| | | ||| || ||||| ||||| || || | | || || || Sbjct 1126114 --AAAAGCTTGTCTCTGACTACTTCAACGGTAAGGAACCCAACAGATCCATCAACCCTGA 1126057 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG--GACAAACTGAT 552275 ||| |||||||| || ||||| || ||||||| || || | ||| ||| || | | Sbjct 1126056 TGAAGCTGTTGCTTACGGTGCTGCCGTTCAAGCCGCCATCTTGACTGGTGACGAA-TCTT 1125998 Query 552276 GAAAAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAAC 552334 || ||| ||| | |||| ||| | ||||| ||||||||||||||||| | ||||| Sbjct 1125997 CGAAGACT-CAAGA-CTTGTTGTTGTTGGATGTCGCTCCTCTATCTCTTGGTATTGAAAC 1125940 Query 552335 AGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATC 552394 | ||| ||| | ||||| || | || ||||| |||||||||| || || || Sbjct 1125939 CGCTGGTGGTGTCATGACCAAGTTGATTCCAAGAAACTCTACTATTCCAACCAAGAAGTC 1125880 Query 552395 TCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGG 552454 | || || || || || | || || ||| | | ||| |||||| | |||||||| Sbjct 1125879 TGAAGTTTTCTCCACTTACGCCGACAACCAACCAGGTGTGTTGATTCAAGTGTTTGAAGG 1125820 Query 552455 AGAAAGAAAATTCACTAAAGATAATAATCAACTT----GGTACTTTTAATTTAGAAGGTA 552510 |||||| ||||| || || |||||| |||| ||| | || |||| Sbjct 1125819 TGAAAGAGCTAAGACTAAGGACAA----CAACTTGTTGGGTAAGTTTGACTTGAGCGGTA 1125764 Query 552511 TTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATG 552570 | || |||||||| | || || || ||||| ||||| ||||||||| | || ||||| | Sbjct 1125763 TCCCACCTGCTCCAAGAGGTGTCCCACAAATCGAAGTCACTTTCGATGTTGACGCCAACG 1125704 Query 552571 GAATTTTGAATGTGACTGC 552589 | |||||||| || |||| Sbjct 1125703 GTATTTTGAACGTCTCTGC 1125685 >seq4 Length=1207720 Score = 127 bits (140), Expect = 2e-23 Identities = 345/524 (66%), Gaps = 8/524 (2%) Strand=Plus/Minus Query 368583 TGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGA 368642 ||||||| | |||| |||| || | ||||| |||||||||||| | ||| ||||| Sbjct 457922 TGATTGGAATGTTTCTAGAAACAGATACTGGGGTACTCCAATTCCACTCTGGGTCTCTGA 457863 Query 368643 TGATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTGT 368702 || || |||||||||||| | ||||| | | ||| | | |||| || || || Sbjct 457862 AGACTACGAGGAAATTGTTTGTGTTGGTTCTGTCGAGGAACTTGAGAAATTGTCAGGCGT 457803 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 | ||||| ||||| || |||| || ||| |||| | |||||| || ||| | Sbjct 457802 CACAGGTATTACCGATTTGCACCGTGATTCTATCGATAACATAAGAATTCCCTCTAAGCA 457743 Query 368763 AGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTC 368822 |||||| ||| | || || |||| | |||||| || |||||||| ||||| ||||| Sbjct 457742 AGGAAAGGGTGAACTGAAAAGAATTGAGGAAGTTTTTGACTGCTGGTTCGAATCTGGTTC 457683 Query 368823 TATGCCTTATG-GTCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATA 368881 ||||| | || ||| | |||||| ||||| || ||| | || | || ||| |||| Sbjct 457682 CATGCCCTTTGCGTCCCA-ACATTACCCATTCGAAAACACCGAAAAATT---TAAAGATA 457627 Query 368882 AAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATA 368941 || | || |||| | | ||| | |||||||| | ||||||||||| | Sbjct 457626 GAG---TTCCAGCGAATTTCATCTCTGAAGGTTTGGATCAAACGAGGGGTTGGTTTTACA 457570 Query 368942 CCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAA 369001 | | || || || || |||| || ||| ||||||| || || | Sbjct 457569 CTTTGGGTGTTTTGGGTACTCAAATATTCGGTACTGTTCCTTACCAAAATGTTATCGTTA 457510 Query 369002 CTGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCCG 369061 | ||||| | || | |||||| |||| ||||| || ||| | |||||| | | Sbjct 457509 CGGGTATCATCTTGGCTGCCGATGGTAAAAAAATGTCCAAGAGTTTGAAAAATTATCCTG 457450 Query 369062 ATCCTAATATTTTAATTGATAAATTTGGTGCTGATACTTTGAGA 369105 |||| || | | | | |||| ||||| ||| |||||||| Sbjct 457449 ATCCGAACTTGATCTTGAACAAATACGGTGCCGATGCTTTGAGA 457406 >seq6 Length=1501435 Score = 104 bits (114), Expect = 2e-16 Identities = 351/539 (65%), Gaps = 12/539 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||||| || ||||| ||| ||||| | || | | || || ||| Sbjct 1089447 ATCGGTATCGATTTGGGTACCACGTATTCGTGTGTCGCGGTCATGAAGAACGGCAAAACC 1089388 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||| | |||||||| ||||||||||||| || || || || || |||| |||||| Sbjct 1089387 GAGATTTTGGCCAATGAACAAGGTAACAGAATCACACCCTCGTACGTGGCTTTTACGGAA 1089328 Query 550115 -ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 || || | | | | |||||||| ||||| | |||| ||| |||||||| || || Sbjct 1089327 GACGAAAGACTCA-TCGGTGATGCGGCAAAGAACCAAGTGGCTGCTAATCCTAAAAACAC 1089269 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGA 550233 |||| ||| | || | || ||||| | ||| || || | | || || || Sbjct 1089268 GATTTATGACGTCAAGAGATTCATTGGGTTACGTTACAACGACAAGTCCGTACAAAGGGA 1089209 Query 550234 TATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTAC 550293 ||||||||| || || | | ||||| || ||||| | | ||| | Sbjct 1089208 CTTGAAGCATTTACCCTTTGAGGTGGTTAACAAAGACGGGAAACC-GGTCGTCAAGGTCG 1089150 Query 550294 TCATGAAGGATCTGTTAA-ACAA--TTTTCA--CCAGAACAAATTTCATCTATGGTTTTA 550348 | |||| | || |||| | |||| || ||| || | || | ||| |||| Sbjct 1089149 AGGTTAAGG----GCGAAGACAAATTATTCACTCCCGAAGAAGTCTCTGCGATGATTTTG 1089094 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 |||||||| |||| || | || | | || || ||||||| | || || | Sbjct 1089093 GGTAAAATGAAGCAAATCGCTGAAGATTATTTGGGCAAAAAAGTTACTCACGCCGTGGTC 1089034 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||| | ||| | |||||||| |||||||| || || Sbjct 1089033 ACTGTGCCTGCGTACTTCAATGACGCGCAAAGACAAGCTACCAAAGATGCCGGTACCATC 1088974 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || || || || || | | ||| | || ||||||||||| ||||| |||| || || Sbjct 1088973 GCGGGGCTCAACATTTTGAGAATTGTGAACGAACCTACTGCCGCTGCTATTGCGTACGG 1088915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295576923920