Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01] 11 sequences; 11,653,826 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4 217 2e-51 seq8 87.8 2e-12 seq5 86.0 6e-12 >seq4 Length=1221263 Score = 217 bits (240), Expect = 2e-51 Identities = 409/599 (68%), Gaps = 7/599 (1%) Strand=Plus/Minus Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665 ||||| | ||||| || | |||| || || |||| |||||||| ||||||||||| Sbjct 1137780 TTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAGGCT 1137721 Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC--- 116722 || |||||||||| ||||||| | ||| | ||||| | | |||||| || | Sbjct 1137720 TCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGATATCATTGACTGGAAGACCAAG 1137661 Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 ||||||||||||||| | |||||||| || ||||||| ||||||||| ||| Sbjct 1137660 TTGAACGACAACGAGAGATATTTCATCTCCAGAGTTTTGGCCTTCTTCGCCGCCTCTGAC 1137601 Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842 || || ||||||||||| |||| ||| ||| || ||||| || | | || | Sbjct 1137600 GGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCCGAGGTTCAACTTCCTGAACTG 1137541 Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902 ||| |||||||| || || || ||||||||| | ||||| || | || || Sbjct 1137540 AAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTACTCTTTG 1137481 Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCT--CCGTTTGTTGAACGCCATCG 116960 | || ||||| ||| | | | || |||||| | ||||| || ||||||| Sbjct 1137480 TTGATTGACACCTACATCAAGGATCCAAAG--GAAGCTGACTTCTTGTTCAATGCCATCG 1137423 Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020 |||| || || || |||| ||||||||||| ||||| || | |||||| | || | Sbjct 1137422 AGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCAATGACAAGG 1137363 Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080 | || ||||| ||| | |||| ||||| || ||||| || || ||||||| | Sbjct 1137362 ACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCTTCAGTG 1137303 Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 | || || | || || ||| | ||||| | || | ||||| || |||| ||| Sbjct 1137302 GTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGACCTTCT 1137243 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199 |||||| | ||| || || || ||| |||| |||||||||||||||| ||||| Sbjct 1137242 CTAACGAGTTGATCAGTAGAGATGAAGGTATGCACACCGACTTTGCCTGTTTGTTGTTC 1137184 >seq8 Length=648860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| |||||||| ||||| || || | || || || ||||| ||| | || || ||| | Sbjct 616812 AAAGATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATC 616753 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | |||| | | | |||| ||||| || || | ||||| ||||| ||||| | | Sbjct 616752 TTCTGACACCATTGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTG 616694 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||| ||| || | |||| || || || || |||| || | | || | |||| Sbjct 616693 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACT 616634 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||||| |||||| |||| |||| | || ||| | ||||| || || || Sbjct 616633 ACAACATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGG 616579 >seq5 Length=1057341 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || || || ||||| ||| | || || ||| | Sbjct 274223 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCT 274282 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| ||||| || || | ||||| || || ||||| | || Sbjct 274283 TCTGACACTATTGACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGA 274341 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| ||| || | |||| || || || || | || |||| | ||| | |||||| Sbjct 274342 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTA 274401 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||||| |||| |||| | || ||| | ||||| || || Sbjct 274402 CAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGG 274452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219129157360