Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Nakazawaea_20peltata_20[genbank_20GCA_5F001599355.1_202016-03-01]
11 sequences; 11,653,826 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4 217 2e-51
seq8 87.8 2e-12
seq5 86.0 6e-12
>seq4
Length=1221263
Score = 217 bits (240), Expect = 2e-51
Identities = 409/599 (68%), Gaps = 7/599 (1%)
Strand=Plus/Minus
Query 116606 TTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCG 116665
||||| | ||||| || | |||| || || |||| |||||||| |||||||||||
Sbjct 1137780 TTCGTCTTGTTCCCAATCAAGTACCACGAAATCTGGCAAATGTACAAGAAGGCCGAGGCT 1137721
Query 116666 TCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGC--- 116722
|| |||||||||| ||||||| | ||| | ||||| | | |||||| || |
Sbjct 1137720 TCTTTCTGGACCGCCGAGGAGATTGACTTAAGTAAGGATATCATTGACTGGAAGACCAAG 1137661
Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782
||||||||||||||| | |||||||| || ||||||| ||||||||| |||
Sbjct 1137660 TTGAACGACAACGAGAGATATTTCATCTCCAGAGTTTTGGCCTTCTTCGCCGCCTCTGAC 1137601
Query 116783 GGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCG 116842
|| || ||||||||||| |||| ||| ||| || ||||| || | | || |
Sbjct 1137600 GGTATTGTCAACGAGAACTTGGTTGAGAACTTCTCTGCCGAGGTTCAACTTCCTGAACTG 1137541
Query 116843 CGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC 116902
||| |||||||| || || || ||||||||| | ||||| || | || ||
Sbjct 1137540 AAGTGTTTCTACGGTTTCCAAATTATGATGGAGAACATCCACTCTGAGACTTACTCTTTG 1137481
Query 116903 CTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCT--CCGTTTGTTGAACGCCATCG 116960
| || ||||| ||| | | | || |||||| | ||||| || |||||||
Sbjct 1137480 TTGATTGACACCTACATCAAGGATCCAAAG--GAAGCTGACTTCTTGTTCAATGCCATCG 1137423
Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020
|||| || || || |||| ||||||||||| ||||| || | |||||| | || |
Sbjct 1137422 AGACTATTCCATGTATCAAGGAGAAGGCCGACTGGGCTTTGAGATGGATCAATGACAAGG 1137363
Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080
| || ||||| ||| | |||| ||||| || ||||| || || ||||||| |
Sbjct 1137362 ACGCTTTGTTCGGTGAGAGATTGGTTGCCTTTGCTGCCGTTGAAGGTATCTTCTTCAGTG 1137303
Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140
| || || | || || ||| | ||||| | || | ||||| || |||| |||
Sbjct 1137302 GTTCCTTTGCTTCTATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTGACCTTCT 1137243
Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTC 117199
|||||| | ||| || || || ||| |||| |||||||||||||||| |||||
Sbjct 1137242 CTAACGAGTTGATCAGTAGAGATGAAGGTATGCACACCGACTTTGCCTGTTTGTTGTTC 1137184
>seq8
Length=648860
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745
||| |||||||| ||||| || || | || || || ||||| ||| | || || ||| |
Sbjct 616812 AAAGATGCAAATTTTCGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAAGTTGAATC 616753
Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804
| |||| | | | |||| ||||| || || | ||||| ||||| ||||| | |
Sbjct 616752 TTCTGACACCATTGACAACG-TCAAGTCCAAGATCCAAGACAAGGAGGGTATCCCACCTG 616694
Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864
|||| ||| || | |||| || || || || |||| || | | || | ||||
Sbjct 616693 ACCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACT 616634
Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919
|||||||||| |||||| |||| |||| | || ||| | ||||| || || ||
Sbjct 616633 ACAACATCCAAAAGGAGTCCACCTTGCACTTGGTCTTGAGATTGAGAGGTGGTGG 616579
>seq5
Length=1057341
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| |||||||| ||||| || || || || || || ||||| ||| | || || ||| |
Sbjct 274223 AAGATGCAAATTTTCGTTAAGACCCTTACAGGTAAGACCATTACCTTGGAAGTTGAATCT 274282
Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | |||| ||||| || || | ||||| || || ||||| | ||
Sbjct 274283 TCTGACACTATTGACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGA 274341
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
||| ||| || | |||| || || || || | || |||| | ||| | ||||||
Sbjct 274342 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTAGAGGACGGCAGAACCTTGTCCGACTA 274401
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| ||||| |||| |||| | || ||| | ||||| || ||
Sbjct 274402 CAACATCCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGG 274452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219129157360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |